DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gad1 and TYRDC

DIOPT Version :9

Sequence 1:NP_001261396.1 Gene:Gad1 / 38484 FlyBaseID:FBgn0004516 Length:510 Species:Drosophila melanogaster
Sequence 2:NP_001329473.1 Gene:TYRDC / 828986 AraportID:AT4G28680 Length:566 Species:Arabidopsis thaliana


Alignment Length:450 Identity:112/450 - (24%)
Similarity:185/450 - (41%) Gaps:83/450 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    40 VIDVLLDFVKATND--RNEKVLDFHHPEDMKRLLDLDVPDRALPLQQLIEDCATTLKYQVKTG-- 100
            ::|.:.|:.|...|  ::..||....|..::.:|....|:|...|::|::|    :..::..|  
plant    63 MVDFIADYYKNLQDSPQDFPVLSQVQPGYLRDMLPDSAPERPESLKELLDD----VSKKIMPGIT 123

  Fly   101 ---HPHFFNQLSNGLDLISMAGEWLTATANTNMFTYEIAPVFILMENVVLTKMREII-------- 154
               .|.:|...::...:....||.|.|..:...||:..:|....:|.:||..:.:::        
plant   124 HWQSPSYFAYYASSTSVAGFLGEMLNAGLSVVGFTWLTSPAATELEIIVLDWLAKLLQLPDHFLS 188

  Fly   155 -GWSGGDSILAPGGSISNLYAFLAARHKMFPNYKEHGSVGLPGTLVMFTSDQCHYSIKSCAAVCG 218
             |...|..::...|..:.|...||||.::.   |:.|...|| .||::.|||.|.|.:....:.|
plant   189 TGKGNGGGVIQGTGCEAVLVVVLAARDRIL---KKVGKTLLP-QLVVYGSDQTHSSFRKACLIGG 249

  Fly   219 LGTDHCIVVPSD---EHGKMITSELERLILERKAKGDIPFFVNATAGTTVLGAFDDINTIADICQ 280
            :..::..::.:|   .:| |....||..|....|||.||||:.||.|||...|.|.:..:.:|.:
plant   250 IHEENIRLLKTDSSTNYG-MPPESLEEAISHDLAKGFIPFFICATVGTTSSAAVDPLVPLGNIAK 313

  Fly   281 KYNCWMHIDAAWGGGLLMSRKHRHPRF-TGVERADSVTWNPHKLMGALLQCSTIHFKEDGLLISC 344
            ||..|:|:|||:.|...:..::|  :| .|:|.|||...|.||.:.|...||.:..|:...||..
plant   314 KYGIWLHVDAAYAGNACICPEYR--KFIDGIENADSFNMNAHKWLFANQTCSPLWVKDRYSLIDA 376

  Fly   345 NQMSAEYLFMTDKQYDISYDTGDKVIQCGRHNDIF----------------------------KL 381
            .:.:.|||.....:.|...:..|..|...|....|                            ||
plant   377 LKTNPEYLEFKVSKKDTVVNYKDWQISLSRRFRFFISPFDVVFAGPISLTNLYVHAFDLYRSLKL 441

  Fly   382 WLQWRAKGTE------------------------GFEQQQDRLMELVQYQLKRIREQSDR 417
            |:..|..|:|                        .||....|...||.::|..:....|:
plant   442 WMVLRLYGSENLRNFIRDHVNLAKHFEDYVAQDPSFEVVTTRYFSLVCFRLAPVDGDEDQ 501

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Gad1NP_001261396.1 Pyridoxal_deC 64..434 CDD:395219 106/423 (25%)
TYRDCNP_001329473.1 PLN02590 2..566 CDD:178200 112/449 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0076
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D810772at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.820

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