DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Gad1 and GAD5

DIOPT Version :10

Sequence 1:NP_523914.2 Gene:Gad1 / 38484 FlyBaseID:FBgn0004516 Length:510 Species:Drosophila melanogaster
Sequence 2:NP_188403.1 Gene:GAD5 / 821044 AraportID:AT3G17760 Length:494 Species:Arabidopsis thaliana


Alignment Length:418 Identity:82/418 - (19%)
Similarity:155/418 - (37%) Gaps:97/418 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    48 VKATNDRNEKVLDFHHPEDMKRLLDLDVPDRALPLQQLIEDCATTLKYQV------KTGHPHFFN 106
            |.|||..:::.|   |.....|.:...||...:|...:.:|.|    |||      ..|:|.   
plant     2 VLATNSDSDEHL---HSTFASRYVRAVVPRFKMPDHCMPKDAA----YQVINDELMLDGNPR--- 56

  Fly   107 QLSNGLDLISMAGEWLTA--------TANTNMFTYEIAPVFILMENVVLTKMREIIGWSGGDSIL 163
                 |:|.|....|:..        :.|.|....:..||...::|..:..:..:.....|:...
plant    57 -----LNLASFVTTWMEPECDKLIMDSVNKNYVDMDEYPVTTELQNRCVNMIANLFHAPVGEDEA 116

  Fly   164 APG-GSISN----LYAFLAARHKMFPNYKEHG-SVGLPGTLVMFTSDQC------HYSIKSCAAV 216
            |.| |::.:    :.|.||.:.|.....|..| .:..|..:.......|      ::.::  ...
plant   117 AIGCGTVGSSEAIMLAGLAFKRKWQHRRKAQGLPIDKPNIVTGANVQVCWEKFARYFEVE--LKE 179

  Fly   217 CGLGTDHCIVVPSDEHGKMITSELERLILERKAKGDIPFFVNATAGTTVLGAFDDINTIADICQK 281
            ..|..|:.::.|:    |.:....|..|.           |.|..|:|:.|.|:|:..:.|:..:
plant   180 VKLSEDYYVMDPA----KAVEMVDENTIC-----------VAAILGSTLTGEFEDVKQLNDLLAE 229

  Fly   282 YNC---W---MHIDAAWGGGLL------MSRKHRHPRFTGVERADSVTWNPHKLMGALLQCSTIH 334
            .|.   |   :|:|||.||.:.      :....|.|....:    :|:.:.:.|:.|.:......
plant   230 KNAETGWETPIHVDAASGGFIAPFLYPDLEWDFRLPWVKSI----NVSGHKYGLVYAGVGWVVWR 290

  Fly   335 FKED---GLLISCNQMSAEYLFMTDKQYDISYDTGDKVIQCGRHNDIFKLWLQWRAKGTEGFEQQ 396
            .|:|   .|:...|.:.|:     ...:.:::..|.        :.|...:.|:...|.||::  
plant   291 TKDDLPEELVFHINYLGAD-----QPTFTLNFSKGS--------SQIIAQYYQFIRLGFEGYK-- 340

  Fly   397 QDRLMELVQYQLKRIR---EQSDRFHLI 421
              .:||......:|:|   |.:.:|:::
plant   341 --NIMENCMDNARRLREGIEMTGKFNIV 366

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Gad1NP_523914.2 Pyridoxal_deC 64..434 CDD:395219 76/402 (19%)
GAD5NP_188403.1 Glu-decarb-GAD 15..444 CDD:130848 76/402 (19%)

Return to query results.
Submit another query.