DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Gad1 and b

DIOPT Version :9

Sequence 1:NP_001261396.1 Gene:Gad1 / 38484 FlyBaseID:FBgn0004516 Length:510 Species:Drosophila melanogaster
Sequence 2:NP_001246025.1 Gene:b / 34791 FlyBaseID:FBgn0000153 Length:575 Species:Drosophila melanogaster


Alignment Length:515 Identity:218/515 - (42%)
Similarity:324/515 - (62%) Gaps:18/515 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 NPNGYKLSERTGKLTAYDLMPTTVTAGP--ETREFLLKVID--VLLDFVKATNDRNEKVLDFHHP 64
            |.|...::.....|:::      |.:.|  |...|:...:|  :.|...:.|| |:.||:::|.|
  Fly    71 NNNNNNITSTKDDLSSF------VASHPAAEFEGFIRACVDEIIKLAVFQGTN-RSSKVVEWHEP 128

  Fly    65 EDMKRLLDLDVPDRALPLQQLIEDCATTLKYQVKTGHPHFFNQLSNGLDLISMAGEWLTATANTN 129
            .::::|.|..:.::.....:|.|....|:::.||||||:|.|||.:|:|..::.|:|||...|.:
  Fly   129 AELRQLFDFQLREQGESQDKLRELLRETIRFSVKTGHPYFINQLYSGVDPYALVGQWLTDALNPS 193

  Fly   130 MFTYEIAPVFILMENVVLTKMREIIGWSG---GDSILAPGGSISNLYAFLAARHKMFPNYKEHGS 191
            ::|||:||:|.|||..||.:||.|:|:..   ||.|..|||||:|.||...||::..|..|::|.
  Fly   194 VYTYEVAPLFTLMEEQVLAEMRRIVGFPNGGQGDGIFCPGGSIANGYAISCARYRHSPESKKNGL 258

  Fly   192 VGLPGTLVMFTSDQCHYSIKSCAAVCGLGTDHCIVVPSDEHGKMITSELERLILERKAKGDIPFF 256
            .... .|::|||:..|||::..|...|.|:||...:.::|.|||..|:||:.:......|..|..
  Fly   259 FNAK-PLIIFTSEDAHYSVEKLAMFMGFGSDHVRKIATNEVGKMRLSDLEKQVKLCLENGWQPLM 322

  Fly   257 VNATAGTTVLGAFDDINTIADICQKYNCWMHIDAAWGGGLLMSRKHRHPRFTGVERADSVTWNPH 321
            |:|||||||||||||:..|:::|:|||.|||:|||||||.|||:|:|| ...|:|||||||||||
  Fly   323 VSATAGTTVLGAFDDLAGISEVCKKYNMWMHVDAAWGGGALMSKKYRH-LLNGIERADSVTWNPH 386

  Fly   322 KLMGALLQCSTIHFKEDGLLISCNQMSAEYLFMTDKQYDISYDTGDKVIQCGRHNDIFKLWLQWR 386
            ||:.|..||||...:...:|..|:..:|.|||..||.||.|:|||||.|||||..|:||.|..|:
  Fly   387 KLLAASQQCSTFLTRHQQVLAQCHSTNATYLFQKDKFYDTSFDTGDKHIQCGRRADVFKFWFMWK 451

  Fly   387 AKGTEGFEQQQDRLMELVQYQLKRIREQSDRFHLILE-PECVNVSFWYVPKRLRGVPHDAKKEVE 450
            ||||:|.|...:::..:.::...::||:.. |.|:|| |||.|:||||||..||.:..:.:....
  Fly   452 AKGTQGLEAHVEKVFRMAEFFTAKVRERPG-FELVLESPECTNISFWYVPPGLREMERNREFYDR 515

  Fly   451 LGKICPIIKGRMMQKGTLMVGYQPDDRRPNFFRSIISSAAVNEADVDFMLDEIHRLGDDL 510
            |.|:.|.:|..|::||::|:.|||..:.|||||.::.::.:.|:|:.:.||||..|..:|
  Fly   516 LHKVAPKVKEGMIKKGSMMITYQPLRQLPNFFRLVLQNSCLEESDMVYFLDEIESLAQNL 575

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Gad1NP_001261396.1 Pyridoxal_deC 64..434 CDD:395219 174/373 (47%)
bNP_001246025.1 AAT_I 128..499 CDD:302748 174/373 (47%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45445343
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0076
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D162307at33208
OrthoFinder 1 1.000 - - FOG0000667
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR45677
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X464
65.940

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