DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gad1 and shbg

DIOPT Version :9

Sequence 1:NP_001261396.1 Gene:Gad1 / 38484 FlyBaseID:FBgn0004516 Length:510 Species:Drosophila melanogaster
Sequence 2:NP_001007152.1 Gene:shbg / 322604 ZFINID:ZDB-GENE-030131-1324 Length:381 Species:Danio rerio


Alignment Length:320 Identity:64/320 - (20%)
Similarity:102/320 - (31%) Gaps:104/320 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   220 GTDHCIVVPSDEHGKMITSE----------LERLILERKAKGDIPFFVNATAGTTV--LGAFDDI 272
            |..|.:.:.|:  ||.:..|          |...:.|.:..|.|..   |..|..|  ...|...
Zfish   117 GAWHLLELRSE--GKFVVLEVNNEVELVVGLHSKLAEEQLTGKIRL---ALGGMLVDKQKLFHPF 176

  Fly   273 NTIADICQKYNCWMHIDAAWGGGLLMSRKHRHPRFTGVERADSVTWNPHKLMGALLQCSTIHFKE 337
            ....|.|.:...|:::...|.                   .|| ||.|......:.:.|  :|..
Zfish   177 EPEMDACIRGGHWLNLSTPWD-------------------TDS-TWEPRPCSSEIKKGS--YFPG 219

  Fly   338 DGLLISCNQMSAEYLFMTDKQYDISYDTGD----KVIQCGRHNDIFKLWLQWRAKGT------EG 392
            .|:.:                    ::|.|    |..:.|...:||..|:     ||      .|
Zfish   220 TGVAV--------------------FNTSDLPALKTEEAGITVEIFGSWI-----GTTLSLQSTG 259

  Fly   393 F----EQQQDRLMELVQYQLKRIREQSDRFHLILEPECV-------------NVSFWYVPKRLR- 439
            |    |..:|..:.|.....:...|.:.....||:...|             .:|.|.....|. 
Zfish   260 FLYVLEGDKDDKLGLKDGSTEFPSEPATLTFTILKNSLVVNSKPKVKSETLDFLSMWKNGMLLTF 324

  Fly   440 -GVPHDAKKEVELGKICPIIKGRMMQKGTLMVGYQPDDRRPNFFRSIISS-----AAVNE 493
             |||.|:    |:.|..|.::| .::| .::.|...|..|..:..:.:||     .|:||
Zfish   325 GGVPGDS----EVAKSNPYLRG-CLEK-IVVQGQVIDLDRAAYKHTAVSSHSCPTEAMNE 378

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Gad1NP_001261396.1 Pyridoxal_deC 64..434 CDD:395219 46/252 (18%)
shbgNP_001007152.1 LamG 65..191 CDD:304605 17/78 (22%)
LamG 214..349 CDD:304605 33/167 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170578193
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.930

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