DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gad1 and Hdc

DIOPT Version :10

Sequence 1:NP_523914.2 Gene:Gad1 / 38484 FlyBaseID:FBgn0004516 Length:510 Species:Drosophila melanogaster
Sequence 2:NP_058712.2 Gene:Hdc / 24443 RGDID:2790 Length:656 Species:Rattus norvegicus


Alignment Length:448 Identity:103/448 - (22%)
Similarity:175/448 - (39%) Gaps:77/448 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    32 ETREFLLK---VIDVLLDFVKATNDRNEKVLDFHHPEDMKRLLDLDVPDRALPLQQLIEDCATTL 93
            |.||:..:   ::|.:..::....:|  :|.....|..::..:....|:.......:..|....:
  Rat     6 EYREYQARGKEMVDYICQYLSTLRER--QVTPNVKPGYLRAQIPSSAPEEPDSWDSIFGDIEQII 68

  Fly    94 KYQV---KTGHPH-FFNQLSNGLDLISMAGEWLTATANTNMFTYEIAPVFILMENVVLTKMREII 154
            ...|   ::.|.| ::..|::...|:   |:.|....|...||:..:|....:|..::..:.:::
  Rat    69 MPGVVHWQSPHMHAYYPALTSWPSLL---GDMLADAINCLGFTWASSPACTELEMNIMDWLAKML 130

  Fly   155 GW----------SGGDSILAPGGSISNLYAFLAARHKMFPNYKEH----GSVGLPGTLVMFTSDQ 205
            |.          |.|..:|....|.|.|.|.||||.......|.|    ....|...||.:.|||
  Rat   131 GLPDFFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKAHEPNADESSLNARLVAYASDQ 195

  Fly   206 CHYSIKSCAAVCGLGTDHCIV----VPSDEHGKMITSELERLILERKAKGDIPFFVNATAGTTVL 266
            .|.|::....:       .:|    :|.|::..:....|::.|.|.|.:|.:|.||.||.|||.:
  Rat   196 AHSSVEKAGLI-------SLVKIKFLPVDDNFSLRGEALQKAIEEDKQQGLVPVFVCATLGTTGV 253

  Fly   267 GAFDDINTIADICQKYNCWMHIDAAWGGGLLMSRKHRHPRFTGVERADSVTWNPHKLMGALLQCS 331
            .|||.::.:..||.:...|:|:|||:.|...:..:.| ....|:|.|||.|:||.|.|.....|:
  Rat   254 CAFDKLSELGPICAREGLWLHVDAAYAGTAFLCPELR-GFLKGIEYADSFTFNPSKWMMVHFDCT 317

  Fly   332 TIHFKEDGLLISCNQMSAEYLFMTDKQYDISYDTGDKVIQCGRHNDIFKLWLQWRAKGTEG---- 392
            ....|:...|  ....|...:::......::.|.....|...|.....|||...|:.|.:.    
  Rat   318 GFWVKDKYKL--QQTFSVNPIYLRHANSGVATDFMHWQIPLSRRFRSIKLWFVIRSFGVKNLQAH 380

  Fly   393 --------------------FEQQQDRLMELVQYQLKRIREQSDRFHLILEPECVNVS 430
                                ||...:|.:.||.::||             .|.|:..|
  Rat   381 VRHGTDMAKYFESLVRSDPVFEIPAERHLGLVVFRLK-------------GPNCLTES 425

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Gad1NP_523914.2 Pyridoxal_deC 64..434 CDD:395219 97/413 (23%)
HdcNP_058712.2 Pyridoxal_deC 39..417 CDD:395219 92/390 (24%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 481..502
Blue background indicates that the domain is not in the aligned region.

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