DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gad1 and Gad2

DIOPT Version :9

Sequence 1:NP_001261396.1 Gene:Gad1 / 38484 FlyBaseID:FBgn0004516 Length:510 Species:Drosophila melanogaster
Sequence 2:NP_036695.1 Gene:Gad2 / 24380 RGDID:2653 Length:585 Species:Rattus norvegicus


Alignment Length:498 Identity:272/498 - (54%)
Similarity:356/498 - (71%) Gaps:8/498 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 LTAYDLMPTTVTAGPETREFLLKVIDVLLDFVKATNDRNEKVLDFHHPEDMKRLLDLDVPDRALP 81
            |.|.||:|......| |..||..|:::||.:|..:.||:.||:|||:|.::.:..:.::.|:...
  Rat    92 LHATDLLPACEGERP-TLAFLQDVMNILLQYVVKSFDRSTKVIDFHYPNELLQEYNWELADQPQN 155

  Fly    82 LQQLIEDCATTLKYQVKTGHPHFFNQLSNGLDLISMAGEWLTATANTNMFTYEIAPVFILMENVV 146
            |::::..|.|||||.:|||||.:|||||.|||::.:|.:|||:|||||||||||||||:|:|.|.
  Rat   156 LEEILTHCQTTLKYAIKTGHPRYFNQLSTGLDMVGLAADWLTSTANTNMFTYEIAPVFVLLEYVT 220

  Fly   147 LTKMREIIGWSG--GDSILAPGGSISNLYAFLAARHKMFPNYKEHGSVGLPGTLVMFTSDQCHYS 209
            |.||||||||.|  ||.|.:|||:|||:||.|.||:||||..||.|...:| .|:.|||:..|:|
  Rat   221 LKKMREIIGWPGGSGDGIFSPGGAISNMYAMLIARYKMFPEVKEKGMAAVP-RLIAFTSEHSHFS 284

  Fly   210 IKSCAAVCGLGTDHCIVVPSDEHGKMITSELERLILERKAKGDIPFFVNATAGTTVLGAFDDINT 274
            :|..||..|:|||..|::..||.||||.|:|||.|||.|.||.:||.|:|||||||.||||.:..
  Rat   285 LKKGAAALGIGTDSVILIKCDERGKMIPSDLERRILEVKQKGFVPFLVSATAGTTVYGAFDPLLA 349

  Fly   275 IADICQKYNCWMHIDAAWGGGLLMSRKHRHPRFTGVERADSVTWNPHKLMGALLQCSTIHFKEDG 339
            :||||:||..|||:||||||||||||||:. :..|||||:||||||||:||..||||.:..:|:|
  Rat   350 VADICKKYKIWMHVDAAWGGGLLMSRKHKW-KLNGVERANSVTWNPHKMMGVPLQCSALLVREEG 413

  Fly   340 LLISCNQMSAEYLFMTDKQYDISYDTGDKVIQCGRHNDIFKLWLQWRAKGTEGFEQQQDRLMELV 404
            |:.|||||.|.|||..||.||:|||||||.:|||||.|:|||||.||||||.|||...|:.:||.
  Rat   414 LMQSCNQMHASYLFQQDKHYDLSYDTGDKALQCGRHVDVFKLWLMWRAKGTTGFEAHIDKCLELA 478

  Fly   405 QYQLKRIREQSDRFHLILE--PECVNVSFWYVPKRLRGVPHDAKKEVELGKICPIIKGRMMQKGT 467
            :| |..|.:..:.:.::.:  |:..||.||:||..||.:..:.::...|.|:.|:||.|||:.||
  Rat   479 EY-LYNIIKNREGYEMVFDGKPQHTNVCFWFVPPSLRVLEDNEERMSRLSKVAPVIKARMMEYGT 542

  Fly   468 LMVGYQPDDRRPNFFRSIISSAAVNEADVDFMLDEIHRLGDDL 510
            .||.|||...:.||||.:||:.|....|:||:::||.|||.||
  Rat   543 TMVSYQPLGDKVNFFRMVISNPAATHQDIDFLIEEIERLGQDL 585

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Gad1NP_001261396.1 Pyridoxal_deC 64..434 CDD:395219 216/373 (58%)
Gad2NP_036695.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..25
Pyridoxal_deC 138..509 CDD:278699 216/373 (58%)
Substrate binding. /evidence=ECO:0000250 181..183 1/1 (100%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166338643
Domainoid 1 1.000 469 1.000 Domainoid score I435
eggNOG 1 0.900 - - E1_COG0076
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 591 1.000 Inparanoid score I950
OMA 1 1.010 - - QHG62386
OrthoDB 1 1.010 - - D162307at33208
OrthoFinder 1 1.000 - - FOG0000667
OrthoInspector 1 1.000 - - otm45028
orthoMCL 1 0.900 - - OOG6_100596
Panther 1 1.100 - - O PTHR45677
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X464
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1413.770

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