DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Gad1 and Gad1

DIOPT Version :9

Sequence 1:NP_001261396.1 Gene:Gad1 / 38484 FlyBaseID:FBgn0004516 Length:510 Species:Drosophila melanogaster
Sequence 2:NP_058703.1 Gene:Gad1 / 24379 RGDID:2652 Length:593 Species:Rattus norvegicus


Alignment Length:501 Identity:286/501 - (57%)
Similarity:367/501 - (73%) Gaps:11/501 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 LTAYDLMPTTVTAGPETREFLLKVIDVLLDFVKATNDRNEKVLDFHHPEDMKRLLD---LDVPDR 78
            |.|.||:|.. ....:|.:|||:|:|:||::|:.|.||:.||||||||..:...::   |::.|.
  Rat    97 LFAQDLLPAK-NGEEQTVQFLLEVVDILLNYVRKTFDRSTKVLDFHHPHQLLEGMEGFNLELSDH 160

  Fly    79 ALPLQQLIEDCATTLKYQVKTGHPHFFNQLSNGLDLISMAGEWLTATANTNMFTYEIAPVFILME 143
            ...|:|::.||..||||.|:||||.||||||.|||:|.:||||||:|||||||||||||||:|||
  Rat   161 PESLEQILVDCRDTLKYGVRTGHPRFFNQLSTGLDIIGLAGEWLTSTANTNMFTYEIAPVFVLME 225

  Fly   144 NVVLTKMREIIGWSG--GDSILAPGGSISNLYAFLAARHKMFPNYKEHGSVGLPGTLVMFTSDQC 206
            .:.|.|||||||||.  ||.|.:|||:|||:|:.:|||:|.||..|..|...:| .||:|||:..
  Rat   226 QITLKKMREIIGWSNKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVP-KLVLFTSEHS 289

  Fly   207 HYSIKSCAAVCGLGTDHCIVVPSDEHGKMITSELERLILERKAKGDIPFFVNATAGTTVLGAFDD 271
            |||||...|..|.|||:.|::..:|.||:|.::||..||:.|.||.:|.:|||||||||.||||.
  Rat   290 HYSIKKAGAALGFGTDNVILIKCNERGKIIPADLEAKILDAKQKGFVPLYVNATAGTTVYGAFDP 354

  Fly   272 INTIADICQKYNCWMHIDAAWGGGLLMSRKHRHPRFTGVERADSVTWNPHKLMGALLQCSTIHFK 336
            |..|||||:|||.|:|:|||||||||||||||| :.:|:|||:||||||||:||.|||||.|..|
  Rat   355 IQEIADICEKYNLWLHVDAAWGGGLLMSRKHRH-KLSGIERANSVTWNPHKMMGVLLQCSAILVK 418

  Fly   337 EDGLLISCNQMSAEYLFMTDKQYDISYDTGDKVIQCGRHNDIFKLWLQWRAKGTEGFEQQQDRLM 401
            |.|:|..||||.|.|||..|||||:|||||||.||||||.||||.||.|:||||.|||.|.::.:
  Rat   419 EKGILQGCNQMCAGYLFQPDKQYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCL 483

  Fly   402 ELVQYQLKRIREQSDRFHLIL--EPECVNVSFWYVPKRLRGVPHDAKKEVELGKICPIIKGRMMQ 464
            ||.:|...:|:.: :.|.::.  |||..||.|||:|:.|||||...::..:|.::.|.||..||:
  Rat   484 ELAEYLYAKIKNR-EEFEMVFNGEPEHTNVCFWYIPQSLRGVPDSPERREKLHRVAPKIKALMME 547

  Fly   465 KGTLMVGYQPDDRRPNFFRSIISSAAVNEADVDFMLDEIHRLGDDL 510
            .||.||||||...:.||||.:||:.|..::|:||:::||.|||.||
  Rat   548 SGTTMVGYQPQGDKANFFRMVISNPAATQSDIDFLIEEIERLGQDL 593

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Gad1NP_001261396.1 Pyridoxal_deC 64..434 CDD:395219 224/376 (60%)
Gad1NP_058703.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..22
Pyridoxal_deC 143..517 CDD:395219 227/380 (60%)
Substrate binding. /evidence=ECO:0000250 189..191 1/1 (100%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166338644
Domainoid 1 1.000 469 1.000 Domainoid score I435
eggNOG 1 0.900 - - E1_COG0076
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H635
Inparanoid 1 1.050 591 1.000 Inparanoid score I950
OMA 1 1.010 - - QHG62386
OrthoDB 1 1.010 - - D162307at33208
OrthoFinder 1 1.000 - - FOG0000667
OrthoInspector 1 1.000 - - otm45028
orthoMCL 1 0.900 - - OOG6_100596
Panther 1 1.100 - - O PTHR45677
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X464
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1615.770

Return to query results.
Submit another query.