DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gad1 and hdl-1

DIOPT Version :9

Sequence 1:NP_001261396.1 Gene:Gad1 / 38484 FlyBaseID:FBgn0004516 Length:510 Species:Drosophila melanogaster
Sequence 2:NP_502265.2 Gene:hdl-1 / 178129 WormBaseID:WBGene00001839 Length:905 Species:Caenorhabditis elegans


Alignment Length:507 Identity:121/507 - (23%)
Similarity:197/507 - (38%) Gaps:115/507 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    39 KVIDVLL---DFVKATNDRNEKVLDFHHPEDMKRLLDLDVPDRALPLQQLIEDCATTLKYQVK-T 99
            ||:|.|:   :.::|.  |....|   .|..:|.||....|.:|..:..::||....:...:. :
 Worm   354 KVVDYLMKQDESIRAA--RCSPAL---KPGYLKALLPPKAPQKAEDIDDILEDYHKLIVPGLSHS 413

  Fly   100 GHPHF--FNQLSNGL-----DL----ISMAG-EWLTATANTNMFTYEIAPVFILMENVVLTKMRE 152
            .||:|  |....|..     ||    |..|| .|   |:|..:...|:..:..|.|.:.|.|  |
 Worm   414 SHPNFHSFYPAGNSFHCLLADLLGGHIGDAGFYW---TSNPALTELEVLMMDWLGEMMALPK--E 473

  Fly   153 IIGW---SGGDSILAPGGSISNLYAFLAARHKMFPNYKEHG----SVGLPGTLVMFTSDQCHYSI 210
            .:.:   |.|...:....:.||....:|||..|....|:..    |..:...||.:||.....||
 Worm   474 FLLFPEASRGGGCMQRSDTESNFLVLVAARTDMIRRMKQRDKRLRSSDILARLVAYTSSDARRSI 538

  Fly   211 K-SCAAVCG------LGTDHCIVVPSDEHGKMITSELERLILERKAKGDIPFFVNATAGTTVLGA 268
            | ..||...      |.||...::..|.....|.:::||        |.|||||.|..||:...:
 Worm   539 KMKMAAEVAMVKMRVLPTDQNFILRGDTLHAAIMADIER--------GLIPFFVGANFGTSGPCS 595

  Fly   269 FDDINTIADICQKYNCWMHIDAAWGGGLLMSRKHRHPRFTGVERADSVTWNPHKLMGALLQCSTI 333
            ||.::.:..:|:::..|:|:|||:.|..|:..:.| ....|::.|||....|.||:.|:  |.  
 Worm   596 FDHLHELGPVCREHGTWLHVDAAYAGTALICPEIR-GLMRGIDWADSFCTTPSKLIIAV--CD-- 655

  Fly   334 HFKEDGLLISCNQMSAEYLFMTDKQYDISY-------DTGDKVIQCGRHNDIFKLWLQWRAKGTE 391
                    :.|       |::.|: :.:.:       |...|.:...:.....|:|...|:.|.|
 Worm   656 --------VCC-------LWVRDR-HKLQHASLENHPDLPFKGLPTSQRVGALKIWFMIRSFGVE 704

  Fly   392 GFEQQQDRLMELVQYQLKRIREQSDRFHLILEPECVNVSFWYVPKRLRGVPHDAKKEVELGKICP 456
            ..:.|....:.|.|...| |.::..||.:     |                    .:|.:|.||.
 Worm   705 NLQNQIREHIRLGQVMTK-ILQKDLRFEV-----C--------------------NKVVMGLICF 743

  Fly   457 IIKGRMMQKGTLMVGYQPDD-----------RRPNFFRSIISSAAVNEADVD 497
            ..|...|....|:  |:.::           :.....|..|:|...:|.|:|
 Worm   744 RAKSNDMFNKALL--YRCNETGNVSLASCVLQNKFVIRMCINSPKCSEEDLD 793

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Gad1NP_001261396.1 Pyridoxal_deC 64..434 CDD:395219 100/403 (25%)
hdl-1NP_502265.2 Pyridoxal_deC 377..746 CDD:278699 104/428 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0076
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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