DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Gad1 and basl-1

DIOPT Version :9

Sequence 1:NP_001261396.1 Gene:Gad1 / 38484 FlyBaseID:FBgn0004516 Length:510 Species:Drosophila melanogaster
Sequence 2:NP_498210.1 Gene:basl-1 / 175779 WormBaseID:WBGene00015467 Length:509 Species:Caenorhabditis elegans


Alignment Length:451 Identity:102/451 - (22%)
Similarity:163/451 - (36%) Gaps:82/451 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   101 HPHFFNQLSNGLDLISMAGEWLTATANTNMFTYEIAPVFILMENVVLTKMREIIGW--------- 156
            |||||...|.|:...|:..:.:::...:..||:...|....:|.:.|..:.::...         
 Worm    73 HPHFFAYFSAGIGYHSILADIISSGLGSVGFTWIACPPITELEKITLDWLVDLTSLPVEFKNSHP 137

  Fly   157 SGGDSILAPGGSISNLYAFLAARH------KMFP-----------------------NYKEHGSV 192
            ..|..|:....|.|.|.|.:.||.      |..|                       |...|.|.
 Worm   138 GHGCGIIQSSASDSTLIAIMTARAAKVEFIKQNPSTFQWLINSTSEHLRSISYWTPVNRTIHDST 202

  Fly   193 GL-------P---GTLVMFTSDQCHYSIKSCAAVCGLGTDHCIVVPSDEHGKMITSELERLIL-- 245
            .:       |   ...||:.:||.|.|::..|.:.|:.......|    .|.|...|::..||  
 Worm   203 DIITPYYHDPRVFKNFVMYFTDQAHSSVEKGAMLAGVRFRKLRSV----RGYMENYEMDSKILID 263

  Fly   246 ---ERKAKGDIPFFVNATAGTTVLGAFDDINTIADICQKYNCWMHIDAAWGGGLLMSRKHRHPRF 307
               :.:::|.|||.|..|.|||...|.||:..|..||||...::|      |......:.:: ..
 Worm   264 AIEQDRSRGFIPFMVALTVGTTATCAADDVEKIGQICQKEGLYLH------GAFAFCDEFKY-LV 321

  Fly   308 TGVERADSVTWNPHKLMGALLQCSTIHFKEDGLLISCNQMSAEYLFMTDKQYDISYDTGDKVIQC 372
            .|::..||...:.||.......|..:.|| :|...| ...:.:.:::..:....:.|.....:..
 Worm   322 NGLKYVDSYNTDLHKAGMINFDCCPLWFK-NGTYAS-RYYNVDPVYLAHEYQSSNMDYRHLEVPL 384

  Fly   373 GRHNDIFKLWLQWRAKGTEGFEQQQDRLMELVQYQLKRIREQSDRFHLILEPECVNVSFWYVPKR 437
            ||.....|:|...|..|.|...:.|.:.:.|.....|.|.| .|:|.|...|.....:|     |
 Worm   385 GRRFRSLKVWFTMRNMGVEKIREYQRKTVSLALLFTKIIVE-GDKFELFTPPHLGMATF-----R 443

  Fly   438 LRGVPHDAKKEVELGKICPIIKGRMMQKGTLMVGYQPDDRRPNFFRSIISSAAVNEADVDF 498
            |:...:...:.:    :..|.:.|.:..|..||      ......|..:.|...||.||.|
 Worm   444 LKNHTNSDNERL----LQAINRDRRIHLGISMV------HGVYVLRFCVGSPLTNEEDVHF 494

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Gad1NP_001261396.1 Pyridoxal_deC 64..434 CDD:395219 88/385 (23%)
basl-1NP_498210.1 AAT_I 1..508 CDD:302748 102/451 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0076
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.