DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Gad1 and bas-1

DIOPT Version :9

Sequence 1:NP_001261396.1 Gene:Gad1 / 38484 FlyBaseID:FBgn0004516 Length:510 Species:Drosophila melanogaster
Sequence 2:NP_001021151.1 Gene:bas-1 / 175778 WormBaseID:WBGene00000239 Length:523 Species:Caenorhabditis elegans


Alignment Length:566 Identity:116/566 - (20%)
Similarity:195/566 - (34%) Gaps:149/566 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    39 KVIDVLLDFVKATNDRNEKVLDFHHPEDMKRLLDLDVPDRALPLQQLIEDCATTLKYQVKTG--- 100
            |::|.:.|:.....||  |.|....|..:..|:....|.......::.:|    |:..|..|   
 Worm    12 KMLDFVADYWDGIRDR--KPLPDVKPGYINDLVPAQAPATPEDWAKIFDD----LENVVVNGATH 70

  Fly   101 --HPHFFNQLSNGLDLISMAGEWLTATANTNMFTYEIAPVFILMENVVLTKMREIIGW------- 156
              |||||......|...|:..:.|:.......||::..|....:|...|..:.:::|.       
 Worm    71 WHHPHFFAYFPTALSYQSIMADILSGGIAGIGFTWKSCPSMTELEMSSLDWVVDLMGLPEHFKNS 135

  Fly   157 --SGGDSILAPGGSISNLYAFLAAR--H----KMFPNY-KEHGSVGLPGTL-------------- 198
              ..|..|:....|.|.:.|.:|||  |    |..|.: |.....|:..||              
 Worm   136 HNGPGCGIIQSTASDSTMIAIMAARATHVERIKSEPTFMKWVSETGVGKTLKNIFDRVKVNKTLV 200

  Fly   199 ----------------------------VMFTSDQCHYSIKSCAAVCGLGTDHCIVVPSDEHGKM 235
                                        ||:.|||.|.|:                    |.|.|
 Worm   201 ARASVTVDDEASGMITPYFHDPTVFERFVMYCSDQAHSSV--------------------EKGAM 245

  Fly   236 ITS---------------------ELERLILERKAKGDIPFFVNATAGTTVLGAFDDINTIADIC 279
            :::                     .|:..|.|.:|:|.|||...||.|||.....|.::.:..:|
 Worm   246 LSAVRMRKLKATRGFLGNYGVSRETLQNAIKEDRARGYIPFMFLATVGTTCSCGVDQVDELGPVC 310

  Fly   280 QKYNCWMHIDAAWGGGLLMSRKHRHPRFTGVERADSVTWNPHKLMGALLQCSTIHFKEDGLLISC 344
            .:...::|:|||:.|...:..:.:: ...|:|..||..:|.||.......||.:.|| :|..:| 
 Worm   311 VEEGLYLHVDAAYAGTFALCEEFKY-LIRGMEHVDSFNFNLHKAGMVNFDCSPMWFK-NGTHVS- 372

  Fly   345 NQMSAEYLFMTDKQYDISYDTGDKVIQCGRHNDIFKLWLQWRAKGTEGFEQQQDRLMELVQYQLK 409
            ...:.:.:::..:....:.|.....:..||.....|:|...|..|.:...:.. |..||:..:..
 Worm   373 RYFNVDAVYLAHEYQTTASDYRHLQVALGRRFRSLKIWFVLRNMGVDKIREYL-RRTELLAAEFS 436

  Fly   410 RIREQSDRFHLILEPECVNVSFWYVPKRLRGVPHDAKKEVELGKICPIIKGRMMQKGTLMVGYQP 474
            ::..::.:|.            .:||:             .||..|..:|.........:.....
 Worm   437 KLILENGKFE------------HFVPQ-------------HLGLTCFRLKNSTNADNEKLCNAIN 476

  Fly   475 DDRR----PN------FFRSIISSAAVNEADVDFMLDEIHRLGDDL 510
            ||||    |:      |.|.::.|......|:.:..|.|..|.:.|
 Worm   477 DDRRIHLVPSTVHGTYFLRMVVCSQLTTLDDIIYARDVIFELAEKL 522

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Gad1NP_001261396.1 Pyridoxal_deC 64..434 CDD:395219 90/453 (20%)
bas-1NP_001021151.1 AAT_I 35..461 CDD:302748 95/478 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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