DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Gad1 and gad1.1

DIOPT Version :9

Sequence 1:NP_001261396.1 Gene:Gad1 / 38484 FlyBaseID:FBgn0004516 Length:510 Species:Drosophila melanogaster
Sequence 2:XP_004917766.1 Gene:gad1.1 / 100496528 XenbaseID:XB-GENE-1011699 Length:590 Species:Xenopus tropicalis


Alignment Length:502 Identity:284/502 - (56%)
Similarity:369/502 - (73%) Gaps:13/502 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 LTAYDLMPTTVTAGPE-TREFLLKVIDVLLDFVKATNDRNEKVLDFHHPEDMKRLLD---LDVPD 77
            |.|.||:|  ...|.| |.:|||:|:|:||::|:.|.||:.||||||||..:...::   |::.|
 Frog    94 LFARDLLP--AKNGEEFTMQFLLEVVDILLNYVRKTFDRSTKVLDFHHPHQLLEGIEGFNLELSD 156

  Fly    78 RALPLQQLIEDCATTLKYQVKTGHPHFFNQLSNGLDLISMAGEWLTATANTNMFTYEIAPVFILM 142
            ....|:|::.||..||||.|:||||.||||||.|||:|.:||||||:|||||||||||||||:||
 Frog   157 NPESLEQILVDCRDTLKYGVRTGHPRFFNQLSTGLDIIGLAGEWLTSTANTNMFTYEIAPVFVLM 221

  Fly   143 ENVVLTKMREIIGWS--GGDSILAPGGSISNLYAFLAARHKMFPNYKEHGSVGLPGTLVMFTSDQ 205
            |.:.|.||||||||:  .||.|.:|||:|||:|:.:|||:|.||..|..|...:| .||:|||:.
 Frog   222 EQITLRKMREIIGWTEKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVP-RLVLFTSEH 285

  Fly   206 CHYSIKSCAAVCGLGTDHCIVVPSDEHGKMITSELERLILERKAKGDIPFFVNATAGTTVLGAFD 270
            .|||||...|..|.|:::.|:|.::|.||:|.::||..|||.|.||.:|.:|||||||||.||||
 Frog   286 SHYSIKKTGAALGFGSENVIMVKTNERGKIIPADLEAKILEAKQKGYVPLYVNATAGTTVYGAFD 350

  Fly   271 DINTIADICQKYNCWMHIDAAWGGGLLMSRKHRHPRFTGVERADSVTWNPHKLMGALLQCSTIHF 335
            .|:.|||||:|||.|:|:||||||||||||:||| :..|:|||:||||||||:||.|||||.|..
 Frog   351 PISEIADICEKYNLWLHVDAAWGGGLLMSRRHRH-KLDGIERANSVTWNPHKMMGVLLQCSAILL 414

  Fly   336 KEDGLLISCNQMSAEYLFMTDKQYDISYDTGDKVIQCGRHNDIFKLWLQWRAKGTEGFEQQQDRL 400
            :|.|:|..||||.|.|||..|||||||||||||.||||||.||||.||.|:||||.|||.|.::.
 Frog   415 REKGILQGCNQMCAGYLFQQDKQYDISYDTGDKAIQCGRHVDIFKFWLMWKAKGTVGFEAQINKC 479

  Fly   401 MELVQYQLKRIREQSDRFHLILE--PECVNVSFWYVPKRLRGVPHDAKKEVELGKICPIIKGRMM 463
            :||.:|...:|..: :.|.::..  ||..||.|||:|..|||:|::.:|:.:|.::.|.||..||
 Frog   480 LELAEYLYSKIYNR-EGFEMVFNGVPEHTNVCFWYIPPSLRGMPNNEEKQEKLHRVAPKIKALMM 543

  Fly   464 QKGTLMVGYQPDDRRPNFFRSIISSAAVNEADVDFMLDEIHRLGDDL 510
            :.||.||||||...:.||||.:||:.|..::|:||:::||.|||.:|
 Frog   544 ESGTTMVGYQPQGDKANFFRMVISNPAATKSDIDFLVEEIERLGQEL 590

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Gad1NP_001261396.1 Pyridoxal_deC 64..434 CDD:395219 221/376 (59%)
gad1.1XP_004917766.1 Pyridoxal_deC 140..514 CDD:395219 221/376 (59%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 460 1.000 Domainoid score I480
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H635
Inparanoid 1 1.050 580 1.000 Inparanoid score I1011
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D162307at33208
OrthoFinder 1 1.000 - - FOG0000667
OrthoInspector 1 1.000 - - otm48085
Panther 1 1.100 - - O PTHR45677
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X464
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
88.160

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