DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Gad1 and csad

DIOPT Version :10

Sequence 1:NP_523914.2 Gene:Gad1 / 38484 FlyBaseID:FBgn0004516 Length:510 Species:Drosophila melanogaster
Sequence 2:XP_017947211.1 Gene:csad / 100486477 XenbaseID:XB-GENE-1012440 Length:490 Species:Xenopus tropicalis


Alignment Length:478 Identity:227/478 - (47%)
Similarity:320/478 - (66%) Gaps:5/478 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly    35 EFLLKVIDVLL-DFVKATNDRNEKVLDFHHPEDMKRLLDLDVPDRALPLQQLIEDCATTLKYQVK 98
            |||.:.:.:|: |.|:...||:.||.::..||.:..:|:|.:.......|.|:..|...:::.||
 Frog    16 EFLKEALVILMQDAVQKGTDRSHKVCEWMEPEQLHEILNLKLQRHGESQQALLGYCRDIVRFSVK 80

  Fly    99 TGHPHFFNQLSNGLDLISMAGEWLTATANTNMFTYEIAPVFILMENVVLTKMREIIGWSGGDSIL 163
            ||||.|||||.:|||..::.|..|:.|.||:.:|||:||||:|||..||..:|..:||:.||.|.
 Frog    81 TGHPRFFNQLFSGLDRHALTGRILSETLNTSQYTYEVAPVFVLMEEEVLRTLRHYVGWTAGDGIF 145

  Fly   164 APGGSISNLYAFLAARHKMFPNYKEHGSVGLPGTLVMFTSDQCHYSIKSCAAVCGLGTDHCIVVP 228
            .|||||||:||...||.:.||:.||.|...|| .:.:||:.:.|||::..||..|:|||:.|:|.
 Frog   146 CPGGSISNMYAINVARFQRFPHAKEKGLSSLP-RMTIFTTQESHYSVRKGAAFMGIGTDNIIIVQ 209

  Fly   229 SDEHGKMITSELERLILERKAKGDIPFFVNATAGTTVLGAFDDINTIADICQKYNCWMHIDAAWG 293
            :::.|||:..:||..|.:.:::|.:||.|:||.|||||||||.:..|||:|:::..|:|:|||:|
 Frog   210 TNDRGKMLPEDLENQIQKSRSEGSVPFLVSATCGTTVLGAFDPLAEIADVCEQHGLWLHVDAAFG 274

  Fly   294 GGLLMSRKHRHPRFTGVERADSVTWNPHKLMGALLQCSTIHFKE-DGLLISCNQMSAEYLFMTDK 357
            |..|:|.|||| ...|:|||:||||||||::|..||||.....: .|||..|:...|.|||.|||
 Frog   275 GSALLSNKHRH-LLNGIERANSVTWNPHKMLGVGLQCSAFLLPDTTGLLQRCHAAYATYLFQTDK 338

  Fly   358 QYDISYDTGDKVIQCGRHNDIFKLWLQWRAKGTEGFEQQQDRLMELVQYQLKRIREQSDRFHLIL 422
            .||:.||||||.|||||..|..||||.|:|.|:||.|::.|:.:|..:|.::.:.:: :.|.||:
 Frog   339 FYDLQYDTGDKSIQCGRRVDCLKLWLMWKALGSEGLEKRVDKALEQTRYLMEEMTKR-EGFCLIM 402

  Fly   423 EPECVNVSFWYVPKRLRGVPHDAKKEVELGKICPIIKGRMMQKGTLMVGYQPDDRRPNFFRSIIS 487
            |||.||:.|||||..||...:.......|||:.|:||.|||:||::||||||...|.||||.::.
 Frog   403 EPEFVNLCFWYVPPSLRHQQNSPDYWERLGKVAPVIKERMMKKGSMMVGYQPHGNRVNFFRQVVV 467

  Fly   488 SAAVNEADVDFMLDEIHRLGDDL 510
            :.||.:.|:||.||||..|.:||
 Frog   468 NPAVTKRDLDFFLDEIELLAEDL 490

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Gad1NP_523914.2 Pyridoxal_deC 64..434 CDD:395219 178/370 (48%)
csadXP_017947211.1 GadA 25..489 CDD:439846 222/466 (48%)

Return to query results.
Submit another query.