DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rcd5 and AT1G75530

DIOPT Version :9

Sequence 1:NP_647852.1 Gene:Rcd5 / 38478 FlyBaseID:FBgn0263832 Length:578 Species:Drosophila melanogaster
Sequence 2:NP_177685.1 Gene:AT1G75530 / 843889 AraportID:AT1G75530 Length:555 Species:Arabidopsis thaliana


Alignment Length:558 Identity:107/558 - (19%)
Similarity:168/558 - (30%) Gaps:255/558 - (45%)


- Green bases have known domain annotations that are detailed below.


  Fly   246 RWKPIDDLALIIGIQQTNDLRIIHRG-VKFSCKFTLQELQQRWYALLYEPAVSRIAVSAIRNLH- 308
            :|.|.||..|...::....|..:.:| |:||.||||.||.:||:.|||.|.|:.::.|....|. 
plant     4 QWLPEDDYLLRKSLEDGTSLETLAKGAVRFSRKFTLSELTERWHCLLYNPKVTSLSSSVGFELQY 68

  Fly   309 -----PE-LVESVQRKALY--------------------------SVQEEDLLGTIKSSEQPKLE 341
                 |: |.:||..:..|                          :|:|.:|.|........|.|
plant    69 GAQFVPQSLFDSVPVRTHYYTTRKRRRLELEESLKVNNNAIDEHLNVEEGNLFGECDDDFGFKFE 133

  Fly   342 Q-------FQELL----DKNASVF--------------------------YCARTAKSLQNHWLL 369
            .       |.::|    |...::|                          |...|..:...|.||
plant   134 DIESFRNTFPDILLSPHDYQTTIFGNEIDDEDDRMVNQMLNINDDQIHDSYVTDTITTTTEHVLL 198

  Fly   370 LK---------------------QYTLLPDQ---------------------------------- 379
            .:                     |..::.||                                  
plant   199 QEVFQDPLFQQPNASLNEPASPSQQQVILDQAEIWIPPPPYDPHPEIVNGVINCVINRESDEIPD 263

  Fly   380 ---------------SVKP--IYGTDQQPL----------------------------------S 393
                           ||.|  :....:.||                                  :
plant   264 NDDINLQLYNPKARNSVNPSSVRNNMKPPLPPVRRSSLQVKSKDIIDSSGFGDCAVTTRASSSSA 328

  Fly   394 FSDA---------------------EDQIFEH------DLNEPRDEALEMERALADRRNKRNIRL 431
            |||:                     |::|.|.      |:|.|.:..:|:|.             
plant   329 FSDSFTEKATSTVAATTSSTLQHFPENEICEQTLSAEMDINVPEENNIEIES------------- 380

  Fly   432 LENELSRW----AVLVDSVLSPTA-------ASEFDNQTL------------------------- 460
             :.||..:    |:::|..|.|..       ||::.|:.:                         
plant   381 -DEELPSFSDLEAMILDMDLEPIGQDQYELDASKYRNEEMARKIMRLEQSAESYMNRDIAAHGAF 444

  Fly   461 ACLCGRHVRYLMRSKEITFGRDAKDCVVDVDLGLEGPAAKISRRQGTIKLRSNGDFFIANEGKRA 525
            |.|.|....|: ...|:..||...:..||:|||..|...:.||||..|||:.:|.|.|.|.||.:
plant   445 ALLYGSSKHYI-NKPEVLLGRATGEYPVDIDLGRSGSETRFSRRQALIKLKQDGSFEIKNLGKFS 508

  Fly   526 IFIDGTPLLSANKARLGHNCTVEISGLRFTFLVNYELI 563
            |:::...:.......|.:||.::|....|.|..|.:.:
plant   509 IWMNDEEINHGEVVILKNNCLIQIREKSFIFEKNEKAV 546

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rcd5NP_647852.1 MCRS_N 246..444 CDD:290064 67/405 (17%)
FHA 465..559 CDD:238017 31/93 (33%)
AT1G75530NP_177685.1 MCRS_N 5..>59 CDD:404241 23/53 (43%)
FHA 456..540 CDD:238017 28/83 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 53 1.000 Domainoid score I4206
eggNOG 1 0.900 - - E1_KOG2293
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 125 1.000 Inparanoid score I1938
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0005081
OrthoInspector 1 1.000 - - otm2640
orthoMCL 1 0.900 - - OOG6_106192
Panther 1 1.100 - - O PTHR13233
Phylome 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X4708
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
109.950

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