DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment FoxL1 and foxc2

DIOPT Version :10

Sequence 1:NP_523912.1 Gene:FoxL1 / 38471 FlyBaseID:FBgn0004895 Length:365 Species:Drosophila melanogaster
Sequence 2:NP_998857.1 Gene:foxc2 / 407875 XenbaseID:XB-GENE-481382 Length:463 Species:Xenopus tropicalis


Alignment Length:331 Identity:109/331 - (32%)
Similarity:158/331 - (47%) Gaps:89/331 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    40 PSAVG------------GAGMEGLMCGSFSPAFYYQGIDSFLALHNNIWGLPISF-LHNSHRPE- 90
            |:|:|            .||..|.|.   :|...|...:.:..      |:..|: .::.|:|. 
 Frog    10 PNALGVVPYLSEQNYYRAAGTYGSMA---TPMSVYPAHEQYTP------GMARSYGPYHHHQPAA 65

  Fly    91 -----KPPFSYIALIAMAISSAPNQRLTLSGIYKFIMDKFPYYRENKQGWQNSIRHNLSLNDCFV 150
                 |||:||||||.|||.:||::::||:|||:||||:||:|||||||||||||||||||:|||
 Frog    66 PKDLVKPPYSYIALITMAIQNAPDKKITLNGIYQFIMDRFPFYRENKQGWQNSIRHNLSLNECFV 130

  Fly   151 KIPRDKNTIEDNDSAGKGSYWMLDSSASDMFEQGNYRRRRTR-------RQRHCGHPNRYERESG 208
            |:||      |:...||||||.||..:.:|||.|::.|||.|       |::.    :|..::.|
 Frog   131 KVPR------DDKKPGKGSYWTLDPDSYNMFENGSFLRRRRRFKKKDVSREKE----DRILKDQG 185

  Fly   209 KDSNDGNSSAAEIRSPSEPLSDFDIFCNERPNYSDRIT--------DLHRQYLSVSLGFNSLFNN 265
            |           ::.|...|        |.|.:..:|.        .:..:..::|....|...:
 Frog   186 K-----------VQGPIPSL--------ELPKHDKKIVIKSESPELPVITKVENLSPDGGSAMQD 231

  Fly   266 EARGLRPLPEI---RECPDDVDASSSSSKAMQSSMELHEELH---SPSAFTP---------PLNR 315
            ..|.:...|.:   ...||...||:..|  :::.|.|....|   ||....|         |:|.
 Frog   232 SPRSVASTPSVSTENSIPDQHPASNGFS--VENIMTLRTSPHGDLSPVPAVPCRTGMVPSLPINY 294

  Fly   316 RETSSS 321
            .:|.||
 Frog   295 TQTQSS 300

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
FoxL1NP_523912.1 FH_FOX 89..186 CDD:469596 64/102 (63%)
foxc2NP_998857.1 FH_FOXC1 66..158 CDD:410818 62/97 (64%)

Return to query results.
Submit another query.