DRSC/TRiP Functional Genomics Resources

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Protein Alignment scrt and SNAI2

DIOPT Version :9

Sequence 1:NP_001261390.1 Gene:scrt / 38469 FlyBaseID:FBgn0004880 Length:653 Species:Drosophila melanogaster
Sequence 2:NP_003059.1 Gene:SNAI2 / 6591 HGNCID:11094 Length:268 Species:Homo sapiens


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scrtNP_001261390.1 zf-C2H2 467..489 CDD:278523
C2H2 Zn finger 469..489 CDD:275370
C2H2 Zn finger 500..520 CDD:275368
COG5048 520..>617 CDD:227381
C2H2 Zn finger 526..546 CDD:275368
zf-H2C2_2 539..562 CDD:290200
C2H2 Zn finger 554..574 CDD:275368
zf-C2H2 554..574 CDD:278523
zf-H2C2_2 566..590 CDD:290200
C2H2 Zn finger 582..599 CDD:275368
SNAI2NP_003059.1 SNAG domain. /evidence=ECO:0000250 1..20
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 80..117
SFP1 <101..182 CDD:227516
C2H2 Zn finger 130..150 CDD:275370
C2H2 Zn finger 161..181 CDD:275368
C2H2 Zn finger 187..207 CDD:275368
zf-H2C2_2 200..223 CDD:404364
zf-C2H2 213..235 CDD:395048
C2H2 Zn finger 215..235 CDD:275368
C2H2 Zn finger 243..259 CDD:275368
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.910

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