DRSC/TRiP Functional Genomics Resources

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Protein Alignment scrt and Scrt2

DIOPT Version :10

Sequence 1:NP_523911.2 Gene:scrt / 38469 FlyBaseID:FBgn0004880 Length:653 Species:Drosophila melanogaster
Sequence 2:NP_001153882.1 Gene:Scrt2 / 545474 MGIID:2139287 Length:311 Species:Mus musculus


Alignment Length:265 Identity:142/265 - (53%)
Similarity:169/265 - (63%) Gaps:47/265 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   364 EQRPASNASSASSNHMPSSPSSNSSSSSSQVQNENSNTTNTNPDGDGCLQDGEHSGASGASAKTV 428
            |..||..|..|:::...|.|.|..||.|::.                         ..|.:|.|.
Mouse    65 ELAPAEPAYPAAASEEYSDPESPQSSLSARY-------------------------FRGEAAVTD 104

  Fly   429 AYTYEAFFVSDGRSKRKHV---ADPAAAA-----------------SGVPTPDQQKTKYTCSECG 473
            :|:.:|||:|||||:|:..   .|.|.|.                 ||.......  ::.|:|||
Mouse   105 SYSMDAFFISDGRSRRRRAGAGGDAAGAGDAGGGGGGGGGGERAGRSGATAGGGH--RHACAECG 167

  Fly   474 KQYATSSNLSRHKQTHRSLDSQSAKKCHTCGKAYVSMPALAMHLLTHKLSHSCGVCGKLFSRPWL 538
            |.||||||||||||||||||||.|:||.|||||||||||||||:|||.|.|.||||||.||||||
Mouse   168 KTYATSSNLSRHKQTHRSLDSQLARKCPTCGKAYVSMPALAMHVLTHNLRHKCGVCGKAFSRPWL 232

  Fly   539 LQGHLRSHTGEKPYGCAHCGKAFADRSNLRAHMQTHSVDKNFECKRCHKTFALKSYLNKHLESAC 603
            ||||:||||||||:|||||||||||||||||||||||..|::.|::|.|:|||||||:||.|:||
Mouse   233 LQGHMRSHTGEKPFGCAHCGKAFADRSNLRAHMQTHSAFKHYRCRQCDKSFALKSYLHKHCEAAC 297

  Fly   604 LKDEE 608
            :|..|
Mouse   298 VKAAE 302

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scrtNP_523911.2 zf-C2H2 467..489 CDD:395048 17/21 (81%)
C2H2 Zn finger 469..489 CDD:275370 17/19 (89%)
C2H2 Zn finger 500..520 CDD:275368 17/19 (89%)
C2H2 Zn finger 526..546 CDD:275368 17/19 (89%)
zf-H2C2_2 539..562 CDD:463886 20/22 (91%)
C2H2 Zn finger 554..574 CDD:275368 19/19 (100%)
zf-C2H2 554..574 CDD:395048 19/19 (100%)
zf-H2C2_2 566..590 CDD:463886 14/23 (61%)
C2H2 Zn finger 582..599 CDD:275368 11/16 (69%)
Scrt2NP_001153882.1 SNAG domain. /evidence=ECO:0000250 1..20
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 71..90 5/18 (28%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 120..156 6/35 (17%)
C2H2 Zn finger 163..183 CDD:275368 17/19 (89%)
COG5048 <216..>283 CDD:227381 53/66 (80%)
C2H2 Zn finger 220..240 CDD:275368 17/19 (89%)
C2H2 Zn finger 248..268 CDD:275368 19/19 (100%)
C2H2 Zn finger 276..292 CDD:275368 10/15 (67%)
Blue background indicates that the domain is not in the aligned region.

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