DRSC/TRiP Functional Genomics Resources

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Protein Alignment scrt and Scrt2

DIOPT Version :9

Sequence 1:NP_001261390.1 Gene:scrt / 38469 FlyBaseID:FBgn0004880 Length:653 Species:Drosophila melanogaster
Sequence 2:NP_001153882.1 Gene:Scrt2 / 545474 MGIID:2139287 Length:311 Species:Mus musculus


Alignment Length:265 Identity:142/265 - (53%)
Similarity:169/265 - (63%) Gaps:47/265 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   364 EQRPASNASSASSNHMPSSPSSNSSSSSSQVQNENSNTTNTNPDGDGCLQDGEHSGASGASAKTV 428
            |..||..|..|:::...|.|.|..||.|::.                         ..|.:|.|.
Mouse    65 ELAPAEPAYPAAASEEYSDPESPQSSLSARY-------------------------FRGEAAVTD 104

  Fly   429 AYTYEAFFVSDGRSKRKHV---ADPAAAA-----------------SGVPTPDQQKTKYTCSECG 473
            :|:.:|||:|||||:|:..   .|.|.|.                 ||.......  ::.|:|||
Mouse   105 SYSMDAFFISDGRSRRRRAGAGGDAAGAGDAGGGGGGGGGGERAGRSGATAGGGH--RHACAECG 167

  Fly   474 KQYATSSNLSRHKQTHRSLDSQSAKKCHTCGKAYVSMPALAMHLLTHKLSHSCGVCGKLFSRPWL 538
            |.||||||||||||||||||||.|:||.|||||||||||||||:|||.|.|.||||||.||||||
Mouse   168 KTYATSSNLSRHKQTHRSLDSQLARKCPTCGKAYVSMPALAMHVLTHNLRHKCGVCGKAFSRPWL 232

  Fly   539 LQGHLRSHTGEKPYGCAHCGKAFADRSNLRAHMQTHSVDKNFECKRCHKTFALKSYLNKHLESAC 603
            ||||:||||||||:|||||||||||||||||||||||..|::.|::|.|:|||||||:||.|:||
Mouse   233 LQGHMRSHTGEKPFGCAHCGKAFADRSNLRAHMQTHSAFKHYRCRQCDKSFALKSYLHKHCEAAC 297

  Fly   604 LKDEE 608
            :|..|
Mouse   298 VKAAE 302

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scrtNP_001261390.1 zf-C2H2 467..489 CDD:278523 17/21 (81%)
C2H2 Zn finger 469..489 CDD:275370 17/19 (89%)
C2H2 Zn finger 500..520 CDD:275368 17/19 (89%)
COG5048 520..>617 CDD:227381 68/89 (76%)
C2H2 Zn finger 526..546 CDD:275368 17/19 (89%)
zf-H2C2_2 539..562 CDD:290200 20/22 (91%)
C2H2 Zn finger 554..574 CDD:275368 19/19 (100%)
zf-C2H2 554..574 CDD:278523 19/19 (100%)
zf-H2C2_2 566..590 CDD:290200 14/23 (61%)
C2H2 Zn finger 582..599 CDD:275368 11/16 (69%)
Scrt2NP_001153882.1 SNAG domain. /evidence=ECO:0000250 1..20
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 71..90 5/18 (28%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 120..156 6/35 (17%)
C2H2 Zn finger 163..183 CDD:275368 17/19 (89%)
COG5048 <216..>283 CDD:227381 53/66 (80%)
zf-C2H2 218..240 CDD:278523 18/21 (86%)
C2H2 Zn finger 220..240 CDD:275368 17/19 (89%)
zf-H2C2_2 233..256 CDD:290200 20/22 (91%)
C2H2 Zn finger 248..268 CDD:275368 19/19 (100%)
zf-H2C2_2 260..284 CDD:290200 14/23 (61%)
C2H2 Zn finger 276..292 CDD:275368 10/15 (67%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167837660
Domainoid 1 1.000 61 1.000 Domainoid score I10448
eggNOG 1 0.900 - - E1_KOG2462
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000984
OrthoInspector 1 1.000 - - mtm8872
orthoMCL 1 0.900 - - OOG6_107036
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3156
SonicParanoid 1 1.000 - - X1445
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
109.630

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