DRSC/TRiP Functional Genomics Resources

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Protein Alignment scrt and trem

DIOPT Version :9

Sequence 1:NP_001261390.1 Gene:scrt / 38469 FlyBaseID:FBgn0004880 Length:653 Species:Drosophila melanogaster
Sequence 2:NP_650861.1 Gene:trem / 42392 FlyBaseID:FBgn0038767 Length:439 Species:Drosophila melanogaster


Alignment Length:324 Identity:79/324 - (24%)
Similarity:113/324 - (34%) Gaps:61/324 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   336 HLPTLEAHAHLRSTSSIAELAAAASVVNEQRP--ASNASSASSNHMPSSPSSNSSSSSSQVQNEN 398
            |.||......:....:.||......:.||..|  |....|..::.....|.....:......:|:
  Fly   162 HDPTQPVPNEIEEAETYAEYEEYELLTNENSPEIAQEKGSTGTDVATEEPPEEEIAEDILDSDED 226

  Fly   399 SNTTNTNPDGDGCLQDGEHSGASGASAKTVAY-----TYEAFFVSDGRSKRKHVADPAAAASGVP 458
            .:.|:..|  :.|.:.|.         |.|||     ..|.|....||.                
  Fly   227 YDPTHAKP--EKCDRSGR---------KPVAYHKNSPKVETFKKKVGRK---------------- 264

  Fly   459 TPDQQKTKYTCSECGKQYATSSNLSRHKQTHRSLDSQSAKKCHTCGKAYVSMPALAMHLLTH--K 521
             |..:.:.|.|..||..|.|.:.|:.|.:.|..:   ...:|..||:.:|....|..|:.||  .
  Fly   265 -PRNKLSTYICDVCGNIYPTQARLTEHMKFHSGV---KPHECEICGRGFVQNQQLVRHMNTHTGN 325

  Fly   522 LSHSCGVCGKLFSRPWLLQGHLRSHTGEKPYGCAHCGKAFADRSNLRAHMQTHSVDKNFECKRCH 586
            ..:.|..|...|:.......|.|.||.|:||.|..|.:.|....||:.|...|:.:|...|..|.
  Fly   326 RPYKCNYCPAAFADRSTKTKHHRIHTKERPYVCDVCSRTFTYSDNLKFHKMIHTGEKPHVCDLCG 390

  Fly   587 KTFALKSY-LNKHLES-----ACLKDEEELMMSMSLSMHDSNSESGASMASSPPHEFLERVKLE 644
            |.| :|:| |..|.|:     ....|.||     |....|...|:         .|||..:..|
  Fly   391 KGF-VKAYKLRLHRETHNRRITWRNDAEE-----STKAEDVKGET---------PEFLNELPKE 439

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scrtNP_001261390.1 zf-C2H2 467..489 CDD:278523 8/21 (38%)
C2H2 Zn finger 469..489 CDD:275370 7/19 (37%)
C2H2 Zn finger 500..520 CDD:275368 6/19 (32%)
COG5048 520..>617 CDD:227381 32/104 (31%)
C2H2 Zn finger 526..546 CDD:275368 5/19 (26%)
zf-H2C2_2 539..562 CDD:290200 9/22 (41%)
C2H2 Zn finger 554..574 CDD:275368 6/19 (32%)
zf-C2H2 554..574 CDD:278523 6/19 (32%)
zf-H2C2_2 566..590 CDD:290200 8/23 (35%)
C2H2 Zn finger 582..599 CDD:275368 7/17 (41%)
tremNP_650861.1 zf-AD 11..87 CDD:214871
COG5048 <264..411 CDD:227381 45/167 (27%)
C2H2 Zn finger 274..294 CDD:275368 7/19 (37%)
zf-H2C2_2 287..311 CDD:290200 6/26 (23%)
C2H2 Zn finger 302..322 CDD:275368 6/19 (32%)
zf-H2C2_2 315..338 CDD:290200 6/22 (27%)
C2H2 Zn finger 330..350 CDD:275368 5/19 (26%)
zf-H2C2_2 345..367 CDD:290200 10/21 (48%)
C2H2 Zn finger 358..378 CDD:275368 6/19 (32%)
zf-H2C2_2 370..394 CDD:290200 9/24 (38%)
C2H2 Zn finger 386..406 CDD:275368 9/20 (45%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR23226
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
11.100

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