DRSC/TRiP Functional Genomics Resources

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Protein Alignment scrt and Prdm9

DIOPT Version :9

Sequence 1:NP_001261390.1 Gene:scrt / 38469 FlyBaseID:FBgn0004880 Length:653 Species:Drosophila melanogaster
Sequence 2:NP_001102373.2 Gene:Prdm9 / 365155 RGDID:1305247 Length:796 Species:Rattus norvegicus


Alignment Length:366 Identity:84/366 - (22%)
Similarity:140/366 - (38%) Gaps:77/366 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   290 PHQLQQQQQQQQQQHQ-----------HHHSQQQHLAPQQHHYLPLQQQQQQQAHHTHLPTLEAH 343
            |.|||:....|.:..:           .|...:|.::......|..|.:.::...     |:|..
  Rat   436 PDQLQEHFDSQNKNDKASNEVKRKSKPRHKWTRQRISTAFSSTLKEQMRSEESKR-----TVEEE 495

  Fly   344 AHLRSTSSIAE-----LAAAASVVNEQ-----RPASNASSASSNHMPSSP------SSNSSSSSS 392
            .....|::|.:     :|:..|.:..|     ...||.|.....|....|      ....|..|.
  Rat   496 LRTGQTTNIEDTAKSFIASETSRIERQCGQCFSDKSNVSEHQRTHTGEKPYICRECGRGFSQKSD 560

  Fly   393 QVQNENSNTTNTNPDGDGCLQDGEHSGASGASAKTVAYTYEAFFVSDGRSKRKHVADPAAAASGV 457
            .::::.   |:|......|.:.|.            .:|.::..:   :.:|.|.          
  Rat   561 LIKHQR---THTEEKPYICRECGR------------GFTQKSDLI---KHQRTHT---------- 597

  Fly   458 PTPDQQKTKYTCSECGKQYATSSNLSRHKQTHRSLDSQSAKKCHTCGKAYVSMPALAMHLLTH-- 520
                 ::..|.|.|||:.:...|:|.:|::||   ..:....|..||:.:.....|..|..||  
  Rat   598 -----EEKPYICRECGRGFTQKSDLIKHQRTH---TGEKPYICRECGRGFTQKSDLIKHQRTHTE 654

  Fly   521 KLSHSCGVCGKLFSRPWLLQGHLRSHTGEKPYGCAHCGKAFADRSNLRAHMQTHSVDKNFECKRC 585
            :..:.|..||:.|::...|..|.|:|||||||.|..||..|..:|||..|::||:.:|.:.|:.|
  Rat   655 EKPYICRECGRGFTQKSSLIRHQRTHTGEKPYICRECGLGFTQKSNLIRHLRTHTGEKPYICREC 719

  Fly   586 HKTFALKSYLNKHLES-------ACLKDEEELMMSMSLSMH 619
            ...|..||.|.:|..:       .|.:..:.|....||..|
  Rat   720 GLGFTRKSNLIQHQRTHTGEKPYICRECGQGLTWKSSLIQH 760

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scrtNP_001261390.1 zf-C2H2 467..489 CDD:278523 8/21 (38%)
C2H2 Zn finger 469..489 CDD:275370 7/19 (37%)
C2H2 Zn finger 500..520 CDD:275368 5/19 (26%)
COG5048 520..>617 CDD:227381 36/105 (34%)
C2H2 Zn finger 526..546 CDD:275368 7/19 (37%)
zf-H2C2_2 539..562 CDD:290200 13/22 (59%)
C2H2 Zn finger 554..574 CDD:275368 8/19 (42%)
zf-C2H2 554..574 CDD:278523 8/19 (42%)
zf-H2C2_2 566..590 CDD:290200 8/23 (35%)
C2H2 Zn finger 582..599 CDD:275368 6/16 (38%)
Prdm9NP_001102373.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..23
KRAB_A-box 32..89 CDD:383038
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 149..172
SSXRD 175..205 CDD:370541
PR-SET_PRDM7_9 244..372 CDD:380970
S-adenosyl-L-methionine binding. /evidence=ECO:0000250|UniProtKB:Q96EQ9 260..262
Substrate binding. /evidence=ECO:0000250|UniProtKB:Q96EQ9 292..298
S-adenosyl-L-methionine binding. /evidence=ECO:0000250|UniProtKB:Q96EQ9 324..325
COG5048 402..748 CDD:227381 80/352 (23%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 443..497 7/58 (12%)
C2H2 Zn finger 521..540 CDD:275368 4/18 (22%)
C2H2 Zn finger 548..568 CDD:275368 2/22 (9%)
C2H2 Zn finger 576..596 CDD:275368 4/34 (12%)
C2H2 Zn finger 604..624 CDD:275368 7/19 (37%)
C2H2 Zn finger 632..652 CDD:275368 5/19 (26%)
C2H2 Zn finger 660..680 CDD:275368 7/19 (37%)
C2H2 Zn finger 688..708 CDD:275368 8/19 (42%)
C2H2 Zn finger 716..736 CDD:275368 7/19 (37%)
C2H2 Zn finger 744..764 CDD:275368 5/17 (29%)
C2H2 Zn finger 772..792 CDD:275368
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 111 1.000 Inparanoid score I4772
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.050

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