DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment scrt and wor

DIOPT Version :9

Sequence 1:NP_001261390.1 Gene:scrt / 38469 FlyBaseID:FBgn0004880 Length:653 Species:Drosophila melanogaster
Sequence 2:NP_476601.1 Gene:wor / 34906 FlyBaseID:FBgn0001983 Length:548 Species:Drosophila melanogaster


Alignment Length:622 Identity:162/622 - (26%)
Similarity:243/622 - (39%) Gaps:168/622 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    84 TSSEAATSHSSNSSNME-ASATTTTSKCWGPSSPTAGTTAPSPPPHSPEAATR-----------V 136
            :|.|...||.....::. |||.......|...|      .|.|.|...|...|           :
  Fly    21 SSPEDHLSHDEGPVDLSVASAAVPMEPHWMAKS------EPEPQPVPTELRRRFDAAMNQTKEQL 79

  Fly   137 AGNVYNGYTRELSPLHYTAYLPRMESEITVIRAAATALVAARTSGNGSGDQHLAAYQTPPSSTTS 201
            |..::. .|||::         |...::......|.:|  ||.   |.|:     ::.||.....
  Fly    80 ARRIWE-ETREIA---------RAFPDVFTREEIAKSL--ARL---GYGE-----FELPPEEEVM 124

  Fly   202 SPSCSPSGAGDRYSPLSSGQTSSERKCFSSTGATLSLPPKKKDIYRPYSLDDKPAHGYR----RR 262
            .|...|    :::.||        |....::...:...|..::.:        |...|.    :.
  Fly   125 EPEPEP----EQHLPL--------RYTRDASPTIIKAEPSDEEQF--------PLRNYNNNLLKS 169

  Fly   263 VPAEEDL----HAAHAILDLSASTAFHPP----TQPHQLQQQQQQQQQQHQHHHS------QQQH 313
            :...||.    :....|..:.:...|:||    .:|..|...|::...::.:..:      ..||
  Fly   170 IAEYEDCMKMQNIKEEIPPIPSPQLFYPPPTPLAEPEDLSVTQRRVLSENMNLQNVARALLSMQH 234

  Fly   314 LAPQQHHYLPLQQQQQQQAHHTHLPTLEAHAHLRSTSSIAE--------LAAAASVVNEQRPASN 370
            :|| ||...|:..::.|:....:      ...::|::.:..        .|..|.:|..|:    
  Fly   235 MAP-QHAPPPIDMEEDQENQDIN------QLKIKSSNDLYYQCQQCNKCYATYAGLVKHQQ---- 288

  Fly   371 ASSASSNHMPSSPSSNSSSSSSQVQNENSNTTNTNPDGDGCLQDGEHSGASGASAKTVAYTYEAF 435
                                :...::.......:.|.|.|.:.|........|||     ..:|.
  Fly   289 --------------------THAYESTEYKIIRSQPGGSGAIVDQTEFCTDQASA-----LIQAA 328

  Fly   436 FVSDGRSKRKHVADPAAAASGVPTPDQQKTKYTCSECGKQYATSSNLSRHKQTH-RSLDSQSAKK 499
            .|:..:|.:|.|        |||       :|.|.:|||.|:|.|.||:|:|.| .|.:....||
  Fly   329 NVASAQSMQKPV--------GVP-------RYHCQDCGKSYSTYSGLSKHQQFHCPSAEGNQVKK 378

  Fly   500 ---CHTCGKAYVSMPALAMHLLTHKLSHSCGVCGKLFSRPWLLQGHLRSHTGEKPYGCAHCGKAF 561
               |..|.|.|||:.||.||:.||.|...|.:|||.||||||||||:|:||||||:.|.||.:||
  Fly   379 VFSCKNCDKTYVSLGALKMHIRTHTLPCKCPICGKAFSRPWLLQGHIRTHTGEKPFSCQHCNRAF 443

  Fly   562 ADRSNLRAHMQTHSVDKNFECKRCHKTFALKSYLNKHLESACLK-------------DEEELMMS 613
            ||||||||||||||..|.:.|..|.|:|:..|.|.|||:|.|..             |:::|...
  Fly   444 ADRSNLRAHMQTHSDVKKYSCPTCTKSFSRMSLLAKHLQSGCQTEQSGGPSGSGGGFDQQQLQQH 508

  Fly   614 MSL--------------SMHDSN--SESGASMASSPP 634
            :.:              |:..||  .|.|......||
  Fly   509 LQVYEEGHNPHQLYYAGSVGSSNGEEEEGGEYQMQPP 545

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scrtNP_001261390.1 zf-C2H2 467..489 CDD:278523 12/21 (57%)
C2H2 Zn finger 469..489 CDD:275370 11/19 (58%)
C2H2 Zn finger 500..520 CDD:275368 10/19 (53%)
COG5048 520..>617 CDD:227381 56/123 (46%)
C2H2 Zn finger 526..546 CDD:275368 15/19 (79%)
zf-H2C2_2 539..562 CDD:290200 15/22 (68%)
C2H2 Zn finger 554..574 CDD:275368 16/19 (84%)
zf-C2H2 554..574 CDD:278523 16/19 (84%)
zf-H2C2_2 566..590 CDD:290200 14/23 (61%)
C2H2 Zn finger 582..599 CDD:275368 7/16 (44%)
worNP_476601.1 C2H2 Zn finger 270..290 CDD:275368 4/43 (9%)
C2H2 Zn finger 317..334 CDD:275368 5/21 (24%)
zf-C2H2 345..367 CDD:278523 12/21 (57%)
C2H2 Zn finger 347..367 CDD:275368 11/19 (58%)
PHA00732 379..>417 CDD:177300 18/37 (49%)
C2H2 Zn finger 382..402 CDD:275368 10/19 (53%)
zf-C2H2_8 405..482 CDD:292531 49/76 (64%)
zf-C2H2 406..428 CDD:278523 15/21 (71%)
C2H2 Zn finger 408..428 CDD:275368 15/19 (79%)
zf-H2C2_2 421..444 CDD:290200 15/22 (68%)
zf-C2H2 434..456 CDD:278523 16/21 (76%)
C2H2 Zn finger 436..456 CDD:275368 16/19 (84%)
zf-H2C2_2 448..473 CDD:290200 15/24 (63%)
C2H2 Zn finger 464..481 CDD:275368 7/16 (44%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45457085
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2462
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.740

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