DRSC/TRiP Functional Genomics Resources

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Protein Alignment scrt and Cf2

DIOPT Version :9

Sequence 1:NP_001261390.1 Gene:scrt / 38469 FlyBaseID:FBgn0004880 Length:653 Species:Drosophila melanogaster
Sequence 2:NP_001350854.1 Gene:Cf2 / 33692 FlyBaseID:FBgn0000286 Length:537 Species:Drosophila melanogaster


Alignment Length:580 Identity:129/580 - (22%)
Similarity:188/580 - (32%) Gaps:226/580 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly   113 PSSPTAGTTAPSPPPHSPEAATRVAGNVYNGYTRELSPLHYTAYLPRMESEITV----------- 166
            |||.|..|.||:.|.|  :.||.:|         .:..|. ||:||.:..:..|           
  Fly    28 PSSATTSTAAPATPTH--QVATVIA---------NMDTLK-TAFLPNLSMDPNVHVSPHYCPMCH 80

  Fly   167 ------------------IRAAATALVAARTSGNGSGDQ------------------------HL 189
                              |...|...:|....|:....|                        |.
  Fly    81 QQFERPQHVADHMQLCHGITLNAQGAIATLDGGHPQAQQHPKLSHPCFNCDEKFGNAVDLDEHHR 145

  Fly   190 AAYQTPP-------------SSTTSSPS---CSPSGAGDRYSPLSSGQTSSERKCFSSTGATLSL 238
            .|:|||.             .|.|..|:   |:..|:....:.|::||..     |.........
  Fly   146 LAHQTPAFLSRCLMCSIYGIHSATQQPNEYKCTQCGSICTTAMLAAGQQG-----FMEQQEAAVT 205

  Fly   239 PPKKKDIYRPYSLDDKPAHGYR--RRVPAE----EDLHAAHAILDLSASTAFHPPTQPHQLQQQQ 297
            |.           |..||...|  |..|.|    :.|.|.|           |     ||.|.||
  Fly   206 PD-----------DQLPAMAPRDMRLTPEEQHHQQQLQAEH-----------H-----HQQQHQQ 243

  Fly   298 QQQQQQHQHHHSQQQHLAPQQHHYLPLQQQQQQQAHHTH------------LPTLEAHAHLRSTS 350
            ||||||      |||.|..||...:..|.||||..||..            :|.|.  ..|...:
  Fly   244 QQQQQQ------QQQELLEQQQREMQEQAQQQQVHHHQQDQDLAGDQVALKVPPLT--VKLNKNA 300

  Fly   351 SIAELAAAASVVNEQRPASNASSASSNHMPSSPSSNSSSSSSQVQNENSNTTNTNPDGDGCLQDG 415
            :...:.:...|:.::.|.|                         .:::.:..|:.|         
  Fly   301 NGGAIVSHPQVIIKEEPLS-------------------------LSDSGDVVNSVP--------- 331

  Fly   416 EHSGASGASAKTVAYTYEAFFVSDGRSKRKHVADPAAAASG-------VPTPDQQKTKYTCSECG 473
                         .|..:|           :...||.|:||       ||.....|.::.|.:|.
  Fly   332 -------------VYAIQA-----------NPGVPAPASSGVLVGTQTVPADLAHKIRHKCPDCP 372

  Fly   474 KQYATSSNLSRHKQTHRSLDSQSAKKCHTCGKAYVSMPALAMHLLTHKLSHSCGVCGKLFSRPWL 538
            |.:.|...|:.|::.|......:.|                      :..::|..|||.|::...
  Fly   373 KTFKTPGTLAMHRKIHTGEADATPK----------------------ERPYTCSYCGKSFTQSNT 415

  Fly   539 LQGHLRSHTGEKPYGCAHCGKAFADRSNLRAHMQTHSVDKNFECKRCHKTFALKSYLNKH 598
            |:.|.|.||||||:.|.:|.|:|:.:..|..|::||:.:|.:.|..|.|.|..:|.|..|
  Fly   416 LKQHTRIHTGEKPFHCGYCEKSFSVKDYLTKHIRTHTGEKPYTCPYCDKRFTQRSALTVH 475

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scrtNP_001261390.1 zf-C2H2 467..489 CDD:278523 6/21 (29%)
C2H2 Zn finger 469..489 CDD:275370 6/19 (32%)
C2H2 Zn finger 500..520 CDD:275368 0/19 (0%)
COG5048 520..>617 CDD:227381 30/79 (38%)
C2H2 Zn finger 526..546 CDD:275368 8/19 (42%)
zf-H2C2_2 539..562 CDD:290200 12/22 (55%)
C2H2 Zn finger 554..574 CDD:275368 6/19 (32%)
zf-C2H2 554..574 CDD:278523 6/19 (32%)
zf-H2C2_2 566..590 CDD:290200 8/23 (35%)
C2H2 Zn finger 582..599 CDD:275368 7/17 (41%)
Cf2NP_001350854.1 COG5048 <366..>473 CDD:227381 36/128 (28%)
C2H2 Zn finger 368..388 CDD:275368 6/19 (32%)
C2H2 Zn finger 403..423 CDD:275368 8/19 (42%)
C2H2 Zn finger 431..451 CDD:275368 6/19 (32%)
zf-H2C2_2 443..468 CDD:316026 9/24 (38%)
C2H2 Zn finger 459..480 CDD:275368 7/17 (41%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45457096
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.840

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