DRSC/TRiP Functional Genomics Resources

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Protein Alignment scrt and Zfp746

DIOPT Version :9

Sequence 1:NP_001261390.1 Gene:scrt / 38469 FlyBaseID:FBgn0004880 Length:653 Species:Drosophila melanogaster
Sequence 2:XP_008761109.1 Gene:Zfp746 / 312303 RGDID:1306209 Length:656 Species:Rattus norvegicus


Alignment Length:565 Identity:124/565 - (21%)
Similarity:186/565 - (32%) Gaps:160/565 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    85 SSEAATSHSSNSSNMEASATTTTSKCWGPS------SPTAGTTAPSPPPHSPEAATRVAGNVYNG 143
            |.:.|.|.....|.:|......|.:..||.      .|:.|:.||.|   :|:...::       
  Rat   140 SLDYAISKPEVLSQIEQGKEPCTWRRTGPKVPEVPVDPSPGSGAPVP---APDLLMQI------- 194

  Fly   144 YTRELSPLHYTAYLPRMESEITVIRAAATALVAARTSGNGSGDQHLAAYQTPPSSTTSSPSCSPS 208
                           :.|.|:.:....|..:.|........|::.....|.            .|
  Rat   195 ---------------KQEGELQLQEQQALGVEAWAAGQPDIGEEPWGLSQL------------DS 232

  Fly   209 GAGDRYSPLSSGQTSSERKCFSSTGATLSLPPKKKDIYRPYSLDDKPAHGYRRRVPAEEDLHAAH 273
            ||||    :|:..||.....||:|     :||.....       |.|.|            |.:.
  Rat   233 GAGD----ISTDATSGVHSNFSTT-----IPPTSWQA-------DLPPH------------HPSS 269

  Fly   274 AILD--LSASTAFHPPTQPH---QLQQQQQQQQQQHQHHHSQQQH---LAPQQHHYL---PLQQ- 326
            |..|  |..:||........   :.:.|:::......|....:.|   .||.|....   |:|: 
  Rat   270 ACSDGTLKLNTAASTEADVKIVIKTEVQEEEVVATPVHPTDLEAHGTLFAPGQATRFFPSPVQEG 334

  Fly   327 --QQQQQAHHTHLPTLEAHAHLRSTSSIAELAAAASVVNEQRPASN----------------ASS 373
              :.|..:..:..|.|......|....|.||:.|  :..|:.||.:                ..|
  Rat   335 AWESQGSSFPSQDPVLGLREPTRPERDIGELSPA--IAQEEAPAGDWLFGGVRWGWNFRCKPPVS 397

  Fly   374 ASSNHMPSSPSSNSSSSSSQVQNENSNTTNTNPDGDGCLQDGEHSGASGASAKTVAYTYEAFFVS 438
            .:...:|.....:|..:...:.:.:.   ...|..|.|...|...|               |...
  Rat   398 LNPRTVPEGLPFSSPDNGEAILDPSQ---APRPFNDPCKYPGRTKG---------------FGHK 444

  Fly   439 DGRSKRKHVADPAAAASGVPTPDQQKTKYTCSECGKQYATSSNLSRHKQTHRSLDSQSAKKCHTC 503
            .|  .:||   |||...|.|        :||:.|||.:....:||.|:::....|........|.
  Rat   445 PG--LKKH---PAAPPGGRP--------FTCATCGKSFQLQVSLSAHQRSCGLSDGAGTGAASTA 496

  Fly   504 ---------------GKAYVSMPALAMHLLTHKLSHSCGVCGKLFSRPWLLQGHLRSHTGEKPYG 553
                           |.:.....||           .||.||:.|:||..|..|...||||:|:.
  Rat   497 TGGGGGGGGGGSSAGGSSARDSSAL-----------RCGECGRCFTRPAHLIRHRMLHTGERPFP 550

  Fly   554 CAHCGKAFADRSNLRAHMQTHSVDKNFECKRCHKTFALKSYLNKH 598
            |..|.|.|.:||.|..|.:||:..:.|.|..|.|:|..|.:|.||
  Rat   551 CTECEKRFTERSKLIDHYRTHTGVRPFTCTVCGKSFIRKDHLRKH 595

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
scrtNP_001261390.1 zf-C2H2 467..489 CDD:278523 8/21 (38%)
C2H2 Zn finger 469..489 CDD:275370 7/19 (37%)
C2H2 Zn finger 500..520 CDD:275368 4/34 (12%)
COG5048 520..>617 CDD:227381 33/79 (42%)
C2H2 Zn finger 526..546 CDD:275368 9/19 (47%)
zf-H2C2_2 539..562 CDD:290200 10/22 (45%)
C2H2 Zn finger 554..574 CDD:275368 8/19 (42%)
zf-C2H2 554..574 CDD:278523 8/19 (42%)
zf-H2C2_2 566..590 CDD:290200 8/23 (35%)
C2H2 Zn finger 582..599 CDD:275368 8/17 (47%)
Zfp746XP_008761109.1 KRAB 113..162 CDD:214630 5/21 (24%)