DRSC/TRiP Functional Genomics Resources

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Protein Alignment scrt and Zscan21

DIOPT Version :10

Sequence 1:NP_523911.2 Gene:scrt / 38469 FlyBaseID:FBgn0004880 Length:653 Species:Drosophila melanogaster
Sequence 2:NP_001012021.1 Gene:Zscan21 / 304342 RGDID:1309981 Length:554 Species:Rattus norvegicus


Alignment Length:488 Identity:112/488 - (22%)
Similarity:168/488 - (34%) Gaps:134/488 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   196 PSSTTSSPSCSPSGAGDRYSPLSSGQTSSERKCFSSTG-ATLSLPPKKKDIYRPYSLDDKPAHGY 259
            ||...|..|....|..|....|......:|.......| .:|.:..::   :|.:...|.|  |.
  Rat    77 PSLELSRKSFKQFGYHDTLEQLGPSTVKAEEDEEKDKGRPSLEISRQR---FRQFGYHDTP--GP 136

  Fly   260 RRRVP---------AEEDLHAAHAILDLSASTAF--------------HPP-------TQPHQLQ 294
            |..:.         .:.::|....||:|.....|              |.|       |....|:
  Rat   137 REALSQLRVLCCEWLQPEIHTKEQILELLVLEQFLTILPRELQAWVQQHCPESAEEAVTLLEDLE 201

  Fly   295 QQQQQQQQQHQHHHSQQQ-----------------------HLAPQQHHYLPLQ-QQQQQQAHHT 335
            |:..:...|....:.|:|                       ..:|:...:.||. |:..::...|
  Rat   202 QELDEPGLQVSSPNEQKQSWEKISTSGTAMESLSSTETQPVDASPKYEFWGPLYIQETGEEEVFT 266

  Fly   336 HLPTLEAHAHLRSTSSIAELAAAASVVNEQRPASNASSASSNHMPSSPSSNSSSSSSQVQNENSN 400
            ..|        |...............:|||.:...|.|........|...::...|:.:.:.:|
  Rat   267 QDP--------RKRQGFKLNPQKEDSADEQRSSEEESHAGGLKRNIMPMITANKYGSRSERQWAN 323

  Fly   401 TTNTNPDGDGCLQD-GEHSGASGASAKTVAYTYEAFFVSDGRSKRKHVADPAAAASGVPTPDQQK 464
            ...........||| |...||..|||:                               |.|.:: 
  Rat   324 NLERERGAKASLQDTGSRKGAEPASAR-------------------------------PAPGEK- 356

  Fly   465 TKYTCSECGKQYATSSNLSRHKQTHRSLDSQSAKKCHTCGKAYVSMPALAMH------------- 516
             :|.|:||||.::.||||::|::||   ..:....|..||||:.....|.:|             
  Rat   357 -RYICAECGKAFSNSSNLTKHRRTH---TGEKPYVCTKCGKAFSHSSNLTLHYRTHLVDRPYDCK 417

  Fly   517 ----------LLTHKLSHS------CGVCGKLFSRPWLLQGHLRSHTGEKPYGCAHCGKAFADRS 565
                      ||.|:..|:      |..|||.||....|..|.|.|||||||.|..|||:|:..:
  Rat   418 CGKAFGQSSDLLKHQRMHTEEAPYQCKDCGKAFSGKGSLIRHYRIHTGEKPYQCNECGKSFSQHA 482

  Fly   566 NLRAHMQTHSVDKNFECKRCHKTFALKSYLNKH 598
            .|.:|.:.|:.:|.::||.|.|.|...|..|||
  Rat   483 GLSSHQRLHTGEKPYKCKECGKAFNHSSNFNKH 515

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scrtNP_523911.2 zf-C2H2 467..489 CDD:395048 11/21 (52%)
C2H2 Zn finger 469..489 CDD:275370 10/19 (53%)
C2H2 Zn finger 500..520 CDD:275368 9/42 (21%)
C2H2 Zn finger 526..546 CDD:275368 9/19 (47%)
zf-H2C2_2 539..562 CDD:463886 14/22 (64%)
C2H2 Zn finger 554..574 CDD:275368 7/19 (37%)
zf-C2H2 554..574 CDD:395048 7/19 (37%)
zf-H2C2_2 566..590 CDD:463886 8/23 (35%)
C2H2 Zn finger 582..599 CDD:275368 9/17 (53%)
Zscan21NP_001012021.1 SCAN 119..229 CDD:128708 18/114 (16%)
COG5048 <338..534 CDD:227381 66/214 (31%)
C2H2 Zn finger 360..380 CDD:275368 10/19 (53%)
C2H2 Zn finger 388..408 CDD:275368 7/19 (37%)
C2H2 Zn finger 418..435 CDD:275368 3/16 (19%)
C2H2 Zn finger 443..463 CDD:275368 9/19 (47%)
C2H2 Zn finger 471..491 CDD:275368 7/19 (37%)
C2H2 Zn finger 499..519 CDD:275368 9/17 (53%)
C2H2 Zn finger 527..547 CDD:275368
zf-C2H2 527..547 CDD:395048
Blue background indicates that the domain is not in the aligned region.

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