DRSC/TRiP Functional Genomics Resources

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Protein Alignment scrt and Zfp212

DIOPT Version :9

Sequence 1:NP_001261390.1 Gene:scrt / 38469 FlyBaseID:FBgn0004880 Length:653 Species:Drosophila melanogaster
Sequence 2:XP_006236507.1 Gene:Zfp212 / 297066 RGDID:1307836 Length:492 Species:Rattus norvegicus


Alignment Length:276 Identity:67/276 - (24%)
Similarity:95/276 - (34%) Gaps:98/276 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   380 PSS-PSSNSSSSSSQVQNENSNTTNTNPDGDGCLQDGEHSGASGASAKTVAYTYEAFFVSDGRSK 443
            ||. ||..||::..|....:......|..||..|.:   ||...::.::|            .|.
  Rat   224 PSGLPSMFSSAAEPQACFGSEQAVFWNSPGDSALLE---SGPGDSNPESV------------ESS 273

  Fly   444 RKHVADPAAAASGVPTPDQQK---------------------TKYTCSECGKQYATSSNLSRHKQ 487
            |    |||...: :..|.:||                     :.|.||||...:.....|:.|.|
  Rat   274 R----DPAPGRN-LDCPRKQKSHRQVQLGQECGQGPKVKRDTSPYKCSECQISFRYKQQLTAHLQ 333

  Fly   488 THRSLDSQSA-------------------KKCHTCGKAYVSMPALAMHLLTHKLSHS-------- 525
            :|.|.:|.||                   .|.|.|...:.|. :..:.|:||:..|.        
  Rat   334 SHTSRESYSATEPEESLRPRPRLKPQAKRSKLHQCDVCHRSF-SCKVSLVTHQRCHQQEGPSTSP 397

  Fly   526 ----------------------------CGVCGKLFSRPWLLQGHLRSHTGEKPYGCAHCGKAFA 562
                                        ||.|||.||.|..|..|.|.||||:||.|..|.|:|.
  Rat   398 QIQERFSPNSLVALPGHIPWRKSRSSLICGYCGKSFSHPSDLVRHQRIHTGERPYSCPECEKSFV 462

  Fly   563 DRSNLRAHMQTHSVDK 578
            .:.:|..|.:.|..::
  Rat   463 QKQHLLQHQKIHQRER 478

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scrtNP_001261390.1 zf-C2H2 467..489 CDD:278523 8/21 (38%)
C2H2 Zn finger 469..489 CDD:275370 7/19 (37%)
C2H2 Zn finger 500..520 CDD:275368 4/19 (21%)
COG5048 520..>617 CDD:227381 26/95 (27%)
C2H2 Zn finger 526..546 CDD:275368 11/19 (58%)
zf-H2C2_2 539..562 CDD:290200 12/22 (55%)
C2H2 Zn finger 554..574 CDD:275368 6/19 (32%)
zf-C2H2 554..574 CDD:278523 6/19 (32%)
zf-H2C2_2 566..590 CDD:290200 3/13 (23%)
C2H2 Zn finger 582..599 CDD:275368
Zfp212XP_006236507.1 KRAB_A-box 142..180 CDD:143639
zf-C2H2 313..335 CDD:278523 8/21 (38%)
C2H2 Zn finger 315..335 CDD:275368 7/19 (37%)
COG5048 <329..>474 CDD:227381 38/145 (26%)
C2H2 Zn finger 368..388 CDD:275368 5/20 (25%)
C2H2 Zn finger 426..446 CDD:275368 11/19 (58%)
zf-C2H2 426..446 CDD:278523 11/19 (58%)
zf-H2C2_2 438..463 CDD:290200 13/24 (54%)
C2H2 Zn finger 454..474 CDD:275368 6/19 (32%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 111 1.000 Inparanoid score I4772
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.050

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