DRSC/TRiP Functional Genomics Resources

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Protein Alignment scrt and Zfp282

DIOPT Version :9

Sequence 1:NP_001261390.1 Gene:scrt / 38469 FlyBaseID:FBgn0004880 Length:653 Species:Drosophila melanogaster
Sequence 2:NP_001100062.1 Gene:Zfp282 / 297065 RGDID:1306278 Length:666 Species:Rattus norvegicus


Alignment Length:514 Identity:123/514 - (23%)
Similarity:173/514 - (33%) Gaps:135/514 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   112 GP-SSPTAGTTA-PSPPP-----HSPEAATRVAGNVYNGYTRELSPLHYTAYLPRMESEITVIRA 169
            || |.|.|...| |...|     |.|| ...:.|....|    ..||     :|..:....|.|.
  Rat   241 GPVSKPDAPVQAEPREEPCVWEQHHPE-EREIPGTADTG----TEPL-----VPAQDMSSQVKRE 295

  Fly   170 AATALVAARTSGNGSGDQHLAAYQTPPSSTTSSPSCSPSGAGDRYSPLSSGQTSSERKCFSSTGA 234
            .|..:.:.|:         |.....|..|.|.    ||..|.|..|.:.    ..|::|      
  Rat   296 EAMCVRSQRS---------LEERAIPTESITD----SPISAQDLLSRIK----QEEQQC------ 337

  Fly   235 TLSLPPKKKDIYRPYSLDDKPAHGYRRRVPAE---EDLHAAHAILDLSASTAFHPPTQPHQLQQQ 296
                      ::....|.:       |.:|.:   |.|.:||.||...                :
  Rat   338 ----------VWDQQDLAE-------RDIPTDPNSESLISAHDILSWI----------------K 369

  Fly   297 QQQQQQQHQHHHSQQQHL----APQQHHYL-----PLQQQQQQQAHHTHLPTLEAHAHLRSTSSI 352
            |::|........|.:..|    .|.....|     |...|.|.|.|...||.|            
  Rat   370 QEEQPYPWGPRDSMEGELGLDSGPSDSLLLVKNPPPASAQPQTQPHQQSLPAL------------ 422

  Fly   353 AELAAAASVVNEQRPASNASSASSNHMPSSPSSNSSSSSSQVQNENSNTTNTNPDGDGCLQDGEH 417
                    .|.|......:.|...:..|:.|...|:....|            |.|:|....|..
  Rat   423 --------AVPENPGGPGSRSLLEDGFPALPGERSTGGEPQ------------PGGEGSAGGGGG 467

  Fly   418 SGA-----SGASAKTVAYTYEAFFVSDGRSKRKHVADPAAAASGVPTPDQQKTKYTCSECGKQYA 477
            .|:     :|||:.|.|        ..|.........|......:.....:...|:|.||||.:.
  Rat   468 GGSGGGGGTGASSSTSA--------GAGAGSGCGSCCPGGLRRSLLAHGARSKPYSCLECGKTFG 524

  Fly   478 TSSNLSRHKQTHRSLDSQSAKKCHTCGKAYVSMPALAMHLLTHK--LSHSCGVCGKLFSRPWLLQ 540
            ...:|..|   |||...:...:|..|.|::.....|..|.:||:  ..:.|..|.|.:||...||
  Rat   525 VRKSLIIH---HRSHTKERPYECAECEKSFNCHSGLIRHQMTHRGERPYKCSECEKTYSRKEHLQ 586

  Fly   541 GHLRSHTGEKPYGCAHCGKAFADRSNLRAHMQTHSVDKNFECKRCHKTFALKSYLNKHL 599
            .|.|.||||:|:.||.|||:|..:.||..|.:.|:.::.:.|..|.|:|..|..|..||
  Rat   587 NHQRLHTGERPFQCALCGKSFIRKQNLLKHQRIHTGERPYTCGECGKSFRYKESLKDHL 645

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scrtNP_001261390.1 zf-C2H2 467..489 CDD:278523 8/21 (38%)
C2H2 Zn finger 469..489 CDD:275370 7/19 (37%)
C2H2 Zn finger 500..520 CDD:275368 5/19 (26%)
COG5048 520..>617 CDD:227381 33/82 (40%)
C2H2 Zn finger 526..546 CDD:275368 9/19 (47%)
zf-H2C2_2 539..562 CDD:290200 14/22 (64%)
C2H2 Zn finger 554..574 CDD:275368 9/19 (47%)
zf-C2H2 554..574 CDD:278523 9/19 (47%)
zf-H2C2_2 566..590 CDD:290200 7/23 (30%)
C2H2 Zn finger 582..599 CDD:275368 6/16 (38%)
Zfp282NP_001100062.1 KRAB 198..260 CDD:214630 8/18 (44%)
KRAB 198..237 CDD:279668
zf-C2H2 514..536 CDD:278523 10/24 (42%)
C2H2 Zn finger 516..536 CDD:275368 9/22 (41%)
zf-H2C2_2 528..553 CDD:290200 8/27 (30%)
COG5048 538..>593 CDD:227381 16/54 (30%)
C2H2 Zn finger 544..564 CDD:275368 5/19 (26%)
zf-H2C2_2 557..581 CDD:290200 7/23 (30%)
COG5048 568..>621 CDD:227381 23/52 (44%)
zf-C2H2 570..592 CDD:278523 9/21 (43%)
C2H2 Zn finger 572..592 CDD:275368 9/19 (47%)
zf-H2C2_2 584..609 CDD:290200 15/24 (63%)
C2H2 Zn finger 600..620 CDD:275368 9/19 (47%)
zf-H2C2_2 612..637 CDD:290200 8/24 (33%)
C2H2 Zn finger 628..648 CDD:275368 8/18 (44%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 111 1.000 Inparanoid score I4772
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.050

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