DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment scrt and Snai2

DIOPT Version :9

Sequence 1:NP_001261390.1 Gene:scrt / 38469 FlyBaseID:FBgn0004880 Length:653 Species:Drosophila melanogaster
Sequence 2:NP_035545.1 Gene:Snai2 / 20583 MGIID:1096393 Length:269 Species:Mus musculus


Alignment Length:237 Identity:100/237 - (42%)
Similarity:133/237 - (56%) Gaps:37/237 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   372 SSASSNHMP----SSPSSNSSSSSSQVQNENSNTTNTNPDGDGCLQDGEHSGASGASAKTVAYTY 432
            |||:..|.|    .||.:..|||..:|....|:.|::.          :|||:...         
Mouse    61 SSAAPLHSPLPSGLSPLTGYSSSLGRVSPPPSSDTSSK----------DHSGSESP--------- 106

  Fly   433 EAFFVSDGRSK-RKHVADPAAAASGVPTPDQQKTKYTCSECGKQYATSSNLSRHKQTHRSLDSQS 496
                :||...: :..::||.|.         :..|:.|:.|.|.|:|.|.|::|||.|....|:.
Mouse   107 ----ISDEEERLQPKLSDPHAI---------EAEKFQCNLCNKTYSTFSGLAKHKQLHCDAQSRK 158

  Fly   497 AKKCHTCGKAYVSMPALAMHLLTHKLSHSCGVCGKLFSRPWLLQGHLRSHTGEKPYGCAHCGKAF 561
            :..|..|.|.|||:.||.||:.||.|...|.:|||.||||||||||:|:||||||:.|.||.:||
Mouse   159 SFSCKYCDKEYVSLGALKMHIRTHTLPCVCKICGKAFSRPWLLQGHIRTHTGEKPFSCPHCNRAF 223

  Fly   562 ADRSNLRAHMQTHSVDKNFECKRCHKTFALKSYLNKHLESAC 603
            |||||||||:||||..|.::||.|.|||:..|.|:||.||.|
Mouse   224 ADRSNLRAHLQTHSDVKKYQCKNCSKTFSRMSLLHKHEESGC 265

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scrtNP_001261390.1 zf-C2H2 467..489 CDD:278523 10/21 (48%)
C2H2 Zn finger 469..489 CDD:275370 10/19 (53%)
C2H2 Zn finger 500..520 CDD:275368 10/19 (53%)
COG5048 520..>617 CDD:227381 55/84 (65%)
C2H2 Zn finger 526..546 CDD:275368 15/19 (79%)
zf-H2C2_2 539..562 CDD:290200 15/22 (68%)
C2H2 Zn finger 554..574 CDD:275368 15/19 (79%)
zf-C2H2 554..574 CDD:278523 15/19 (79%)
zf-H2C2_2 566..590 CDD:290200 15/23 (65%)
C2H2 Zn finger 582..599 CDD:275368 9/16 (56%)
Snai2NP_035545.1 SNAG domain. /evidence=ECO:0000250 1..20
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 81..117 11/58 (19%)
C2H2 Zn finger 131..151 CDD:275370 10/19 (53%)
C2H2 Zn finger 162..182 CDD:275368 10/19 (53%)
C2H2 Zn finger 188..208 CDD:275368 15/19 (79%)
zf-H2C2_2 201..224 CDD:290200 15/22 (68%)
zf-C2H2 214..236 CDD:278523 15/21 (71%)
C2H2 Zn finger 216..236 CDD:275368 15/19 (79%)
zf-H2C2_2 228..253 CDD:290200 16/24 (67%)
C2H2 Zn finger 244..260 CDD:275368 8/15 (53%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2462
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.