DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG12605 and Patz1

DIOPT Version :9

Sequence 1:NP_001261387.1 Gene:CG12605 / 38468 FlyBaseID:FBgn0035481 Length:619 Species:Drosophila melanogaster
Sequence 2:NP_062520.1 Gene:Patz1 / 56218 MGIID:1891832 Length:641 Species:Mus musculus


Alignment Length:596 Identity:137/596 - (22%)
Similarity:199/596 - (33%) Gaps:184/596 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   120 QLCEHLEWSAAQSLVQMNSSKQEKQR------RAGTTGSPATVAAPVSASVSLR----RPVGRAP 174
            |:..|    :.:.|..:|..::...|      |.|....||..|...:.|....    ..:|...
Mouse    18 QVSRH----STEMLHNLNQQRKNGGRFCDVLLRVGDESFPAHRAVLAACSEYFESVFSAQLGDGG 78

  Fly   175 AEDGKVIFYAPPASASGSPRQPEPVALKRERERDKEREREKERERDRMREQQLVAATAAASI--- 236
            |.||      .||...|:...|...|                 ...|..|...:::.....|   
Mouse    79 AADG------GPADVGGAAAAPGGGA-----------------GGSRELEMHTISSKVFGDILDF 120

  Fly   237 -YRGRSVEETEAAHDLLSLSQSL--PPLIPPCVVTIMKQEQEQLRSPEIQEISNSASSRSPQSTI 298
             |..|.|...|:..:|::.::.|  ..:|..| ..::||...|:..|         .:|:.....
Mouse   121 AYTSRIVVRLESFPELMTAAKFLLMRSVIEIC-QEVIKQSNVQILVP---------PARADIMLF 175

  Fly   299 RFIGSSS----YDLMGGSSEGANNCSPLTPPNSDHSSDVDIDMSSSSESGLQQWGKPNPQQNQQR 359
            |..|:|.    .|:..|::..||:                        :|:.  |...|::...|
Mouse   176 RPPGTSDLGFPLDMTNGAAMAANS------------------------NGIA--GSMQPEEEAAR 214

  Fly   360 ASALKMCLNMLDGRTKASKAA--AVTKQDRQEPMQPRPKSAQ------SNASSGGGPPSEPPENP 416
            |:          |...|.:|:  .:...||. ||...|.|.|      .|.:|     |.||...
Mouse   215 AT----------GAAIAGQASLPVLPGVDRL-PMVAGPLSPQLLTSPFPNVAS-----SAPPLTS 263

  Fly   417 AASLGHSSSGN------GENYAKRKRGCYKCCECGKQYATSSNLSRHKQTHR------------- 462
            ....|.....|      |.....|:.|...|..|||.:..::.|.:|:..|.             
Mouse   264 KRGRGRPRKANLLDSMFGSPGGLREAGILPCGLCGKVFTDANRLRQHEAQHGVTSLQLGYIDLPP 328

  Fly   463 ----------SLDSQSAKK---------CNTCGKAYVSMPALAMHLLTHKLSH------SCDICG 502
                      |.|....:|         |..|||.:..:    .||..|||||      ||.:||
Mouse   329 PRLGENGLPISEDPDGPRKRSRTRKQVACEICGKIFRDV----YHLNRHKLSHSGEKPYSCPVCG 389

  Fly   503 KLFSRPWLLQGHLRSHTGE--KPYACVHCGKAFADRSNLRAHM-QTHSGDKNFKCHRCNKTFALK 564
            ..|.|...:..|:|||.|.  |||.|..|||.|:...:|..|: |.|:.::..||..||.:||.:
Mouse   390 LRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQTCNASFATR 454

  Fly   565 SYLNKHLESAC-------------LRDAGAIDQGKGLEE-----------EDDDCSKQDELEMGD 605
            ..|..||  ||             ||.|...|..|...|           |...||.||.:|..|
Mouse   455 DRLRSHL--ACHEDKVPCQVCGKYLRAAYMADHLKKHSEGPSNFCSICNREGQKCSHQDLIESSD 517

  Fly   606 ELESDENSQDI 616
            ......::.|:
Mouse   518 SYGDLSDASDL 528

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG12605NP_001261387.1 zf-C2H2 439..461 CDD:278523 6/21 (29%)
C2H2 Zn finger 441..461 CDD:275370 6/19 (32%)
C2H2 Zn finger 472..492 CDD:275368 6/19 (32%)
COG5048 492..>570 CDD:227381 35/86 (41%)
zf-C2H2 496..518 CDD:278523 9/27 (33%)
C2H2 Zn finger 498..518 CDD:275368 7/19 (37%)
zf-H2C2_2 511..534 CDD:290200 12/24 (50%)
zf-C2H2 524..546 CDD:278523 9/22 (41%)
C2H2 Zn finger 526..546 CDD:275368 8/20 (40%)
zf-H2C2_2 538..562 CDD:290200 8/24 (33%)
C2H2 Zn finger 554..571 CDD:275368 6/16 (38%)
Patz1NP_062520.1 BTB 30..159 CDD:306997 29/152 (19%)
C2H2 Zn finger 294..314 CDD:275368 6/19 (32%)
SFP1 <329..406 CDD:227516 23/80 (29%)
C2H2 Zn finger 357..377 CDD:275368 9/23 (39%)
zf-H2C2_2 369..394 CDD:316026 12/24 (50%)
SFP1 <379..436 CDD:227516 22/56 (39%)
C2H2 Zn finger 385..405 CDD:275368 7/19 (37%)
C2H2 Zn finger 415..433 CDD:275368 7/17 (41%)
zf-C2H2_6 442..467 CDD:316434 11/26 (42%)
C2H2 Zn finger 444..464 CDD:275368 9/21 (43%)
C2H2 Zn finger 470..489 CDD:275368 5/18 (28%)
zf-C2H2_assoc3 492..558 CDD:318778 8/37 (22%)
C2H2 Zn finger 561..582 CDD:275368
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

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