DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG12605 and Cf2

DIOPT Version :9

Sequence 1:NP_001261387.1 Gene:CG12605 / 38468 FlyBaseID:FBgn0035481 Length:619 Species:Drosophila melanogaster
Sequence 2:NP_001350854.1 Gene:Cf2 / 33692 FlyBaseID:FBgn0000286 Length:537 Species:Drosophila melanogaster


Alignment Length:276 Identity:76/276 - (27%)
Similarity:118/276 - (42%) Gaps:47/276 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   322 LTPPNSDHSSDVDIDMSSSSESGLQQWGKPNPQQNQQRASALKMCLNMLDGRTKASKAAAVTKQD 386
            |||....|...:      .:|...||..:...||.||:...|:.....:..:.:..:... .:||
  Fly   220 LTPEEQHHQQQL------QAEHHHQQQHQQQQQQQQQQQELLEQQQREMQEQAQQQQVHH-HQQD 277

  Fly   387 R-----QEPMQPRPKSAQSNASSGGGPPSEPP-----ENPAASLGHSSSGNGEN----YA-KRKR 436
            :     |..::..|.:.:.|.::.||.....|     |.|   |..|.||:..|    || :...
  Fly   278 QDLAGDQVALKVPPLTVKLNKNANGGAIVSHPQVIIKEEP---LSLSDSGDVVNSVPVYAIQANP 339

  Fly   437 GCYKCCECGKQYATS---SNLSRHKQTHRSLDSQSAKKCNTCGKAYVSMPALAMHLLTH------ 492
            |.......|....|.   ::|: ||..|         ||..|.|.:.:...||||...|      
  Fly   340 GVPAPASSGVLVGTQTVPADLA-HKIRH---------KCPDCPKTFKTPGTLAMHRKIHTGEADA 394

  Fly   493 ---KLSHSCDICGKLFSRPWLLQGHLRSHTGEKPYACVHCGKAFADRSNLRAHMQTHSGDKNFKC 554
               :..::|..|||.|::...|:.|.|.||||||:.|.:|.|:|:.:..|..|::||:|:|.:.|
  Fly   395 TPKERPYTCSYCGKSFTQSNTLKQHTRIHTGEKPFHCGYCEKSFSVKDYLTKHIRTHTGEKPYTC 459

  Fly   555 HRCNKTFALKSYLNKH 570
            ..|:|.|..:|.|..|
  Fly   460 PYCDKRFTQRSALTVH 475

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG12605NP_001261387.1 zf-C2H2 439..461 CDD:278523 5/24 (21%)
C2H2 Zn finger 441..461 CDD:275370 5/22 (23%)
C2H2 Zn finger 472..492 CDD:275368 7/19 (37%)
COG5048 492..>570 CDD:227381 31/86 (36%)
zf-C2H2 496..518 CDD:278523 8/21 (38%)
C2H2 Zn finger 498..518 CDD:275368 8/19 (42%)
zf-H2C2_2 511..534 CDD:290200 12/22 (55%)
zf-C2H2 524..546 CDD:278523 6/21 (29%)
C2H2 Zn finger 526..546 CDD:275368 6/19 (32%)
zf-H2C2_2 538..562 CDD:290200 9/23 (39%)
C2H2 Zn finger 554..571 CDD:275368 7/17 (41%)
Cf2NP_001350854.1 COG5048 <366..>473 CDD:227381 39/115 (34%)
C2H2 Zn finger 368..388 CDD:275368 7/19 (37%)
C2H2 Zn finger 403..423 CDD:275368 8/19 (42%)
C2H2 Zn finger 431..451 CDD:275368 6/19 (32%)
zf-H2C2_2 443..468 CDD:316026 10/24 (42%)
C2H2 Zn finger 459..480 CDD:275368 7/17 (41%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45457105
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.840

Return to query results.
Submit another query.