DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG12605 and Hic2

DIOPT Version :9

Sequence 1:NP_001261387.1 Gene:CG12605 / 38468 FlyBaseID:FBgn0035481 Length:619 Species:Drosophila melanogaster
Sequence 2:NP_001099332.1 Gene:Hic2 / 287940 RGDID:1305338 Length:622 Species:Rattus norvegicus


Alignment Length:636 Identity:146/636 - (22%)
Similarity:218/636 - (34%) Gaps:210/636 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    65 KSPLTASSVLKNANGNGLGTGGKSPLKSLAKRNSRSILKREIIDLDDE----------------- 112
            |:.|.|||:.               .|||       :|...:|:||.:                 
  Rat    61 KNVLAASSIY---------------FKSL-------VLHDNLINLDTDMVSSTVFQQILDFIYTG 103

  Fly   113 ---DGEE-QEDQLCEHLEWSAAQSLVQMNSSKQEKQRRAGTTGSPATVAAPVSASVSLRRPVGRA 173
               .|:: .|......|..::...|.::.:..:.|.:|||....|..|     .:..:.||....
  Rat   104 KLLPGDQPSEPNFSTLLTAASYLQLPELAALCRRKLKRAGKPFGPGRV-----GTAGMGRPTRSQ 163

  Fly   174 PAEDGKVIFYAPPASASGSPRQPEPVALKRERERDKEREREKERERDRMREQQLVAATAAASIYR 238
            ......||....|....|....|.|..|.:.:..|.|                         ::.
  Rat   164 RLSTASVIQARYPGLVDGRKGHPAPQELPQAKGSDDE-------------------------LFL 203

  Fly   239 GRSVEETEAAHDL-------------------------------LSLSQSLPPLIPPCVVT-IMK 271
            |.|.:  |:.|.|                               |.||:..|||.|...|. :..
  Rat   204 GSSTQ--ESTHGLGLGGPAAGEVGLGGCSTSTNGSSGGCEQELGLDLSKKSPPLPPTTPVPHLTP 266

  Fly   272 QEQEQLRSPEIQEISNSASSRSPQSTIRFIGSSSYDLMGGSSEGANNCSPLTPPNSDHSSDVDID 336
            ::..||...:.:....:::|..|.|     .|:||..:|.           ||       |..:|
  Rat   267 EDPAQLSDSQRESPPPTSTSALPVS-----NSTSYVELGA-----------TP-------DEPMD 308

  Fly   337 MSSSSESGLQ----QWGKPNPQQNQQRASALKMCLNM--------LDGRTKASKAAAVTKQDRQE 389
            :..:.|:.|.    |.|:|   :...|.||.|...|.        .|.|...||::. ..::.:.
  Rat   309 LEGAEENHLSLLEGQGGQP---RKSLRHSARKKDWNKKEPVAGSPFDRRETGSKSSC-PGEEGEA 369

  Fly   390 PMQPRPKSAQSNASSGGGP--PS--EPP-------EN---------PAASLGHSSSGNGENYAKR 434
            |....|....::::.||||  ||  |||       ||         .:.|.|.|....|.:|..|
  Rat   370 PGDRVPNGVLASSAGGGGPSAPSYGEPPYPCKEEEENGKDVSEDSGQSGSEGGSGHTGGAHYVYR 434

  Fly   435 KRG---------CYKCCECGKQYATSSNLSRHKQTHR--------------------------SL 464
            :.|         .|.|..|.|.:.:|..|:.|.:||.                          |.
  Rat   435 QEGYETVSYGDNLYVCIPCAKGFPSSEQLNAHVETHTEEELFIKEEGAYETGSGGAEEEAEDLST 499

  Fly   465 DSQSAK-------KCNTCGKAYVSMPALAMHLLTHKLSH--SCDICGKLFSRPWLLQGHLRSHTG 520
            .|.:|.       ||:.|.|.|.....|..|..||.|:.  .|:||||:|::...:..|:|||.|
  Rat   500 PSSTAYAAEPRPFKCSVCEKTYKDPATLRQHEKTHWLTRPFPCNICGKMFTQRGTMTRHMRSHLG 564

  Fly   521 EKPYACVHCGKAFADRSNLRAHMQTHSGDKNFKCHRCNKTFALKSYLNKHL 571
            .||:||..||..|..:..|..||:.|||:|.::|..|...|..:..|..||
  Rat   565 LKPFACDECGMRFTRQYRLTEHMRVHSGEKPYECQLCGGKFTQQRNLISHL 615

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG12605NP_001261387.1 zf-C2H2 439..461 CDD:278523 7/21 (33%)
C2H2 Zn finger 441..461 CDD:275370 6/19 (32%)
C2H2 Zn finger 472..492 CDD:275368 6/19 (32%)
COG5048 492..>570 CDD:227381 31/79 (39%)
zf-C2H2 496..518 CDD:278523 8/23 (35%)
C2H2 Zn finger 498..518 CDD:275368 8/19 (42%)
zf-H2C2_2 511..534 CDD:290200 11/22 (50%)
zf-C2H2 524..546 CDD:278523 8/21 (38%)
C2H2 Zn finger 526..546 CDD:275368 7/19 (37%)
zf-H2C2_2 538..562 CDD:290200 9/23 (39%)
C2H2 Zn finger 554..571 CDD:275368 4/16 (25%)
Hic2NP_001099332.1 BTB_POZ 25..144 CDD:365784 19/104 (18%)
C2H2 Zn finger 450..470 CDD:275368 6/19 (32%)
SUF4-like 510..>559 CDD:411020 16/48 (33%)
C2H2 Zn finger 514..534 CDD:411020 6/19 (32%)
C2H2 Zn finger 514..534 CDD:275368 6/19 (32%)
zf-C2H2 540..562 CDD:395048 8/21 (38%)
C2H2 Zn finger 542..562 CDD:275368 8/19 (42%)
C2H2 Zn finger 542..559 CDD:411020 6/16 (38%)
zf-C2H2 568..590 CDD:395048 8/21 (38%)
C2H2 Zn finger 570..590 CDD:275368 7/19 (37%)
zf-H2C2_2 582..607 CDD:404364 10/24 (42%)
C2H2 Zn finger 598..618 CDD:275368 6/18 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

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