DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG12605 and snai-1

DIOPT Version :10

Sequence 1:NP_647845.2 Gene:CG12605 / 38468 FlyBaseID:FBgn0035481 Length:619 Species:Drosophila melanogaster
Sequence 2:NP_499902.2 Gene:snai-1 / 186874 WormBaseID:WBGene00019299 Length:193 Species:Caenorhabditis elegans


Alignment Length:215 Identity:89/215 - (41%)
Similarity:111/215 - (51%) Gaps:35/215 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   378 KAAAVTKQDRQEPMQPRPKSAQSNASSGGGPPSEPPENPAASLGHSSSGNGENYAKRKRGCYKCC 442
            |:...|.:|...| .|.|.|:.|:||.                  ||..|.:         ..|.
 Worm     8 KSIFETIEDLISP-DPAPSSSSSSASC------------------SSLDNQK---------LVCQ 44

  Fly   443 ECGKQYATSSNLSRHKQTHRSLDSQSAKKCNTCGKAYVSMPALAMHLLTHKLSHSCDICGKLFSR 507
            .|.|.|.|...|.||.|.|:  :.:..:.|..|.|.|.|..||.|||.||.|...|:.|||.|||
 Worm    45 FCKKTYLTYFGLRRHLQFHK--EGKLQQSCPHCKKVYRSPGALKMHLKTHSLPCVCNDCGKSFSR 107

  Fly   508 PWLLQGHLRSHTGEKPYACVHCGKAFADRSNLRAHMQTHSGDKNFKCHRCNKTFALKSYLNKHLE 572
            ||||:||||:||||||:.|..||:.||||||||||:|||||:|..:|.||.::||......:|  
 Worm   108 PWLLKGHLRTHTGEKPFGCEFCGRCFADRSNLRAHLQTHSGEKKHRCSRCGQSFARVQVRQRH-- 170

  Fly   573 SACLRDAGAIDQGKGLEEED 592
            ..|.|..|:   |...|:||
 Worm   171 EQCCRGGGS---GGEAEKED 187

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG12605NP_647845.2 COG5048 283..>561 CDD:227381 79/182 (43%)
zf-C2H2 439..461 CDD:395048 9/21 (43%)
C2H2 Zn finger 441..461 CDD:275370 9/19 (47%)
C2H2 Zn finger 472..492 CDD:275368 10/19 (53%)
zf-C2H2 496..518 CDD:395048 15/21 (71%)
C2H2 Zn finger 498..518 CDD:275368 15/19 (79%)
zf-H2C2_2 511..534 CDD:463886 14/22 (64%)
zf-C2H2 524..546 CDD:395048 14/21 (67%)
C2H2 Zn finger 526..546 CDD:275368 14/19 (74%)
zf-H2C2_2 538..562 CDD:463886 14/23 (61%)
C2H2 Zn finger 554..571 CDD:275368 5/16 (31%)
snai-1NP_499902.2 C2H2 Zn finger 72..92 CDD:275368 10/19 (53%)
COG5048 98..>155 CDD:227381 40/56 (71%)
C2H2 Zn finger 98..118 CDD:275368 15/19 (79%)
C2H2 Zn finger 126..146 CDD:275368 14/19 (74%)
C2H2 Zn finger 154..170 CDD:275368 5/15 (33%)

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