DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG12605 and Scrt1

DIOPT Version :9

Sequence 1:NP_001261387.1 Gene:CG12605 / 38468 FlyBaseID:FBgn0035481 Length:619 Species:Drosophila melanogaster
Sequence 2:NP_570963.1 Gene:Scrt1 / 170729 MGIID:2176606 Length:348 Species:Mus musculus


Alignment Length:301 Identity:147/301 - (48%)
Similarity:182/301 - (60%) Gaps:38/301 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly   300 FIGSSS-YDLMGGSSEGANNCSPLTPPNSDHSSDVDIDMSSSSESGLQQWGKPNPQQNQQRASAL 363
            ::|.:| ||   |.:|.|....|  .|...:::.|..::..:: ||    ..|.|....:.|:|.
Mouse    44 YVGPASVYD---GDAEAALLKGP--SPEPMYAAAVRGELGPAA-SG----SAPPPTPRPELATAA 98

  Fly   364 KMCLN---------------MLDGRT--KASKAAAVTKQDRQEPMQPRPKSAQSNASSGGGPPSE 411
            ...:|               :.|||:  ||:.|.|..     .|......:..|:|..||||.:.
Mouse    99 GGYINGDAAVSEGYAADAFFITDGRSRRKAANANAAA-----APSTASVAAPDSDAGGGGGPGTR 158

  Fly   412 PPENPAASLGHSSSGNGE-----NYAKRKRGCYKCCECGKQYATSSNLSRHKQTHRSLDSQSAKK 471
            ...:.:||.|.:..|.|.     :.|....|.:.|.||||.||||||||||||||||||||.|::
Mouse   159 GSGSGSASRGGTRVGAGTEARAGSGATGAGGRHACGECGKTYATSSNLSRHKQTHRSLDSQLARR 223

  Fly   472 CNTCGKAYVSMPALAMHLLTHKLSHSCDICGKLFSRPWLLQGHLRSHTGEKPYACVHCGKAFADR 536
            |.||||.||||||:|||||||.|.|.|.:|||.||||||||||:||||||||:.|.|||||||||
Mouse   224 CPTCGKVYVSMPAMAMHLLTHDLRHKCGVCGKAFSRPWLLQGHMRSHTGEKPFGCAHCGKAFADR 288

  Fly   537 SNLRAHMQTHSGDKNFKCHRCNKTFALKSYLNKHLESACLR 577
            |||||||||||..|:|:|.||.|:||||||||||.||||.:
Mouse   289 SNLRAHMQTHSAFKHFQCKRCKKSFALKSYLNKHYESACFK 329

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG12605NP_001261387.1 zf-C2H2 439..461 CDD:278523 17/21 (81%)
C2H2 Zn finger 441..461 CDD:275370 17/19 (89%)
C2H2 Zn finger 472..492 CDD:275368 16/19 (84%)
COG5048 492..>570 CDD:227381 60/77 (78%)
zf-C2H2 496..518 CDD:278523 16/21 (76%)
C2H2 Zn finger 498..518 CDD:275368 15/19 (79%)
zf-H2C2_2 511..534 CDD:290200 18/22 (82%)
zf-C2H2 524..546 CDD:278523 18/21 (86%)
C2H2 Zn finger 526..546 CDD:275368 18/19 (95%)
zf-H2C2_2 538..562 CDD:290200 16/23 (70%)
C2H2 Zn finger 554..571 CDD:275368 13/16 (81%)
Scrt1NP_570963.1 SNAG domain. /evidence=ECO:0000250 1..20
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 130..190 15/64 (23%)
zf-C2H2 191..213 CDD:278523 17/21 (81%)
C2H2 Zn finger 193..213 CDD:275368 17/19 (89%)
C2H2 Zn finger 224..241 CDD:275371 13/16 (81%)
COG5048 <245..>313 CDD:227381 51/67 (76%)
zf-C2H2 248..270 CDD:278523 16/21 (76%)
C2H2 Zn finger 250..270 CDD:275368 15/19 (79%)
zf-H2C2_2 263..286 CDD:290200 18/22 (82%)
C2H2 Zn finger 278..298 CDD:275368 18/19 (95%)
zf-C2H2 278..298 CDD:278523 18/19 (95%)
zf-H2C2_2 290..314 CDD:290200 16/23 (70%)
C2H2 Zn finger 306..322 CDD:275368 12/15 (80%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167837657
Domainoid 1 1.000 53 1.000 Domainoid score I11285
eggNOG 1 0.900 - - E1_KOG2462
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S1379
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1332418at2759
OrthoFinder 1 1.000 - - FOG0000984
OrthoInspector 1 1.000 - - mtm8872
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X1445
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
109.660

Return to query results.
Submit another query.