DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sc2 and Tecr

DIOPT Version :9

Sequence 1:NP_647836.2 Gene:Sc2 / 38457 FlyBaseID:FBgn0035471 Length:302 Species:Drosophila melanogaster
Sequence 2:XP_038953381.1 Gene:Tecr / 191576 RGDID:620376 Length:342 Species:Rattus norvegicus


Alignment Length:313 Identity:166/313 - (53%)
Similarity:214/313 - (68%) Gaps:21/313 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 ELEILNAKNSKPYGKV----KVPSGATPIGDLRALIHKTLKQTPHANRQSLRLELKGKSLKDTDT 62
            |:||.:||..:   |:    ||...|| |.:::.|..||..|. :..||||||:.|||||||.|.
  Rat    39 EVEIRDAKTRE---KLCFLDKVEPQAT-ISEIKTLFTKTHPQW-YPARQSLRLDPKGKSLKDEDV 98

  Fly    63 LESLSLRSGDKIYVKDLGPQIGWKTVFLAEYAGPLIVYLIFYFRPELVYGKAASLPISLTT--HI 125
            |:.|.:.:...:|.:|||.||.|.||||.||||||.:||:||||...:||:......|..|  |:
  Rat    99 LQKLPVGTTATLYFRDLGAQISWVTVFLTEYAGPLFIYLLFYFRVPFIYGRKYDFTSSRHTVVHL 163

  Fly   126 AAGCYTVHYVKRLLETIFVHRFSHATMPLRNLFKNCTYYWGFTAYVSYHVNHPQFTSPCMCTVWG 190
            |..|::.||:||||||:|||||||.||||||:||||||||||.|:::|::|||.:|.|    .:|
  Rat   164 ACMCHSFHYIKRLLETLFVHRFSHGTMPLRNIFKNCTYYWGFAAWMAYYINHPLYTPP----TYG 224

  Fly   191 ------ALGAFALCELGNFSVHIALRNLRPPGTKVRKIPVADGNPLTKLFDLVSCPNYTYEIGAW 249
                  ||..|.:|:|||||:|:|||:|||.|:|.||||....||.|.||.||||||||||:|:|
  Rat   225 VQQVKLALAIFVICQLGNFSIHMALRDLRPAGSKTRKIPYPTKNPFTWLFLLVSCPNYTYEVGSW 289

  Fly   250 VSFSVLTSCLAAYLFAFAGAFQMTIWALAKHRNYKKEFKDYPRQRRSIFPFVL 302
            :.|:::|.|:...||:..|..||||||..|||:|.|||:|||..|..|.||:|
  Rat   290 IGFAIMTQCVPVALFSLVGFTQMTIWAKGKHRSYLKEFRDYPPLRMPIIPFLL 342

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sc2NP_647836.2 Tsc13_N 3..79 CDD:176396 31/79 (39%)
PLN02560 15..299 CDD:178174 158/295 (54%)
PEMT 150..302 CDD:304400 89/157 (57%)
TecrXP_038953381.1 PLN02560 57..339 CDD:178174 156/287 (54%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166339325
Domainoid 1 1.000 201 1.000 Domainoid score I2927
eggNOG 1 0.900 - - E1_KOG1639
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H36231
Inparanoid 1 1.050 328 1.000 Inparanoid score I2377
OMA 1 1.010 - - QHG53957
OrthoDB 1 1.010 - - D537031at33208
OrthoFinder 1 1.000 - - FOG0001630
OrthoInspector 1 1.000 - - otm46017
orthoMCL 1 0.900 - - OOG6_102127
Panther 1 1.100 - - O PTHR10556
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X1032
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1615.770

Return to query results.
Submit another query.