DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sc2 and art-1

DIOPT Version :9

Sequence 1:NP_647836.2 Gene:Sc2 / 38457 FlyBaseID:FBgn0035471 Length:302 Species:Drosophila melanogaster
Sequence 2:NP_495430.1 Gene:art-1 / 174140 WormBaseID:WBGene00000198 Length:308 Species:Caenorhabditis elegans


Alignment Length:290 Identity:156/290 - (53%)
Similarity:193/290 - (66%) Gaps:13/290 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 SGATPIGDLRALI-HKTLKQTPHANRQSLRLELKGKSLKDTDTLESLSLRSGDKI-YVKDLGPQI 83
            ||:..|..::..| .|.||.|  ..||:||:|.|||.|.|...|..|.|.|...: ||:||||||
 Worm    24 SGSETIKAIKKRIAQKKLKLT--EERQALRVEPKGKPLADDQKLSDLGLSSQKAVLYVRDLGPQI 86

  Fly    84 GWKTVFLAEYAGPLIVYLIFYFRPELVYGKAASLPISLTTH----IAAGCYTVHYVKRLLETIFV 144
            .|||||:|||||||.||.:||.||..:||:||   ::.|.|    ||...::.||.|||.||.|:
 Worm    87 AWKTVFMAEYAGPLFVYPLFYLRPTFIYGQAA---VNATMHPAVQIAFFAWSFHYAKRLFETQFI 148

  Fly   145 HRFSHATMPLRNLFKNCTYYWGFTAYVSYHVNHPQFTSPCM--CTVWGALGAFALCELGNFSVHI 207
            |||.::|||..||.|||:|||||.|:|:|.||||.||.|..  ..|:..|..|.:.|.||.|:||
 Worm   149 HRFGNSTMPQFNLVKNCSYYWGFAAFVAYFVNHPLFTPPAFGDLQVYFGLAGFVISEFGNLSIHI 213

  Fly   208 ALRNLRPPGTKVRKIPVADGNPLTKLFDLVSCPNYTYEIGAWVSFSVLTSCLAAYLFAFAGAFQM 272
            .||||||.||:.|:||..|||||:.||:.|||||||||:.:|:.||::...|.|.:|..||..||
 Worm   214 LLRNLRPAGTRERRIPKPDGNPLSLLFNYVSCPNYTYEVASWIFFSIMVQSLPAIIFTTAGFAQM 278

  Fly   273 TIWALAKHRNYKKEFKDYPRQRRSIFPFVL 302
            .|||..|||||.|||.|||:.|::|.||||
 Worm   279 AIWAQGKHRNYLKEFPDYPKNRKAIVPFVL 308

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sc2NP_647836.2 Tsc13_N 3..79 CDD:176396 24/59 (41%)
PLN02560 15..299 CDD:178174 152/285 (53%)
PEMT 150..302 CDD:304400 87/153 (57%)
art-1NP_495430.1 Tsc13_N 5..82 CDD:176396 24/59 (41%)
PLN02560 23..307 CDD:178174 153/287 (53%)
PEMT 155..308 CDD:304400 87/152 (57%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160158663
Domainoid 1 1.000 194 1.000 Domainoid score I1860
eggNOG 1 0.900 - - E1_KOG1639
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H36231
Inparanoid 1 1.050 303 1.000 Inparanoid score I1609
Isobase 1 0.950 - 0.802101 Normalized mean entropy S1292
OMA 1 1.010 - - QHG53957
OrthoDB 1 1.010 - - D537031at33208
OrthoFinder 1 1.000 - - FOG0001630
OrthoInspector 1 1.000 - - oto18107
orthoMCL 1 0.900 - - OOG6_102127
Panther 1 1.100 - - LDO PTHR10556
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2319
SonicParanoid 1 1.000 - - X1032
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1615.790

Return to query results.
Submit another query.