DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ubi-p63E and RGD1562433

DIOPT Version :9

Sequence 1:NP_001261383.1 Gene:Ubi-p63E / 38456 FlyBaseID:FBgn0003943 Length:763 Species:Drosophila melanogaster
Sequence 2:NP_001071146.1 Gene:RGD1562433 / 499222 RGDID:1562433 Length:510 Species:Rattus norvegicus


Alignment Length:279 Identity:63/279 - (22%)
Similarity:97/279 - (34%) Gaps:63/279 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   505 QLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSD----------TIENVK 559
            ||..||         ||:..::       ::.|||           |.|          .:...|
  Rat    12 QLVSGR---------ESSSRII-------RVSVKT-----------PQDCQEFFLAENSNVHRFK 49

  Fly   560 AKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT--IT 622
            .:|........|:..||:.||.|:|...||...|...||:|.|:|.|........||.|.|  .|
  Rat    50 KQISKYLHCDTDRLVLIYTGKILQDQDILSQRGILDGSTVHAVVRSRLKGSACTGTLAGPTGHCT 114

  Fly   623 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQ-----LEDGRTLSDYNIQKESTLHLVLRLR 682
            ...|||..:..:.....|.........:|:.|..:     |||.......|.::.:.:|:     
  Rat   115 HRSEPSVKLGRLARSSPDLADFFSQLVQLLPAAPESVVQFLEDPLIQGLANEKQANGVHI----- 174

  Fly   683 GGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG-----RTLSD 742
                    ..:.||:..........|..:..:|.:|.:...:||| .|.|.:..|     .:.||
  Rat   175 --------PESSKTVQKRDPALKFPETFQKPVQQQEVLQEHKQRL-EALKAVPGGDNAMHPSCSD 230

  Fly   743 YNIQKESTLHLVLRLRGGI 761
            ......|||..::..:|.|
  Rat   231 IQQAMLSTLASLVASKGHI 249

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ubi-p63ENP_001261383.1 Ubiquitin 1..76 CDD:176398
UBQ 1..72 CDD:214563
Ubiquitin 77..152 CDD:176398
UBQ 77..148 CDD:214563
Ubiquitin 153..228 CDD:176398
UBQ 153..224 CDD:214563
Ubiquitin 229..304 CDD:176398
UBQ 229..300 CDD:214563
Ubiquitin 305..380 CDD:176398
UBQ 305..376 CDD:214563
Ubiquitin 381..456 CDD:176398
UBQ 381..452 CDD:214563
Ubiquitin 457..532 CDD:176398 6/26 (23%)
UBQ 457..528 CDD:214563 6/22 (27%)
Ubiquitin 533..608 CDD:176398 23/84 (27%)
UBQ 533..604 CDD:214563 21/80 (26%)
Ubiquitin 609..684 CDD:176398 16/81 (20%)
UBQ 609..680 CDD:214563 16/77 (21%)
Ubiquitin 685..760 CDD:176398 16/79 (20%)
UBQ 685..756 CDD:214563 16/75 (21%)
RGD1562433NP_001071146.1 UBQ 24..94 CDD:214563 21/87 (24%)
UBQ 24..94 CDD:294102 21/87 (24%)
UBA_PLICs 467..506 CDD:270582
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5272
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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