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Protein Alignment Ubi-p63E and Ubqlnl

DIOPT Version :9

Sequence 1:	NP_001261383.1	Gene:	Ubi-p63E / 38456	FlyBaseID:	FBgn0003943	Length:	763	Species:	Drosophila melanogaster
Sequence 2:	NP_001013921.1	Gene:	Ubqlnl / 293287	RGDID:	1307202	Length:	612	Species:	Rattus norvegicus

Alignment Length:	202	Identity:	48/202 - (23%)
Similarity:	78/202 - (38%)	Gaps:	45/202 - (22%)

- Green bases have known domain annotations that are detailed below.

  Fly    75 GGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQK 139
            |.:::.||| .|......|....::...|.::........:|..|:..|:.|:|..|||...|..
  Rat    29 GVIRVIVKT-PGNQNVFTVAEDTSVRQFKEQLSSHFKCQMEQLVLVSMGRLLKDHDTLSQRGITD 92

  Fly   140 ESTLHLVLRLRGGMQ----IFVKTLT-----------GKTITL---------EVEPSDTIENVKA 180
            ..|:|:|::.:.|.:    .|...||           |.:.|:         :||.|..:|...:
  Rat    93 GHTIHVVIKSKHGSRSLTHSFRNLLTNNPCHQDRNPKGNSSTVCQSAGMSETKVESSILMEPDAS 157

  Fly   181 KI--QDKEGIPPDQ----------QRLI---FAGKQL-EDGRTLSDYNIQKESTLHLVLRLRGGM 229
            |:  ||.|...|:|          |||:   |...|| .:...:.|...|.....||:    ...
  Rat   158 KVCTQDPEVGSPEQIEQMLETLCVQRLLSNMFFMHQLPPEHPDMQDLIQQNPEVSHLL----DNS 218

  Fly   230 QIFVKTL 236
            :|..:||
  Rat   219 EILCQTL 225

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.