DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ubi-p63E and rad-23

DIOPT Version :10

Sequence 1:NP_523909.2 Gene:Ubi-p63E / 38456 FlyBaseID:FBgn0003943 Length:763 Species:Drosophila melanogaster
Sequence 2:NP_496488.2 Gene:rad-23 / 174785 WormBaseID:WBGene00013924 Length:323 Species:Caenorhabditis elegans


Alignment Length:312 Identity:64/312 - (20%)
Similarity:109/312 - (34%) Gaps:82/312 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLSDYNIQK 63
            :.:..:|||.....||:....||..|||.:..::|  ..|:.|:||:.||.|:|...:.:.....
 Worm     3 LSVTFRTLTQVNFNLELNEDQTIAEVKALVASEKGDDYAPELQKLIYNGKILDDSVKVGEVGFDS 67

  Fly    64 ESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENV----------------KAKIQDKEGI 112
            ..              ||..:..|....||.||.|:...                .|.:..:...
 Worm    68 SK--------------FVVVMLSKRKVTEVAPSSTVATAAEPVPVAAAPASNPAPAADVAPEAAA 118

  Fly   113 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG-------GMQIFVKTLTGKTITLEVE 170
            |.:.:.|  ..:|.|:...::.....:|.|   :..||.       .::..:..|.......|.:
 Worm   119 PAEAEAL--TDEQEENVLAITGMGYDREQT---IAALRAAFWNPDRAVEFLLNGLPDDAADQEPD 178

  Fly   171 --PSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN-------IQKESTLH--LVLR 224
              |...|:||     |::|  .|...::....||.:.|.|...|       :|:.:.::  ||..
 Worm   179 LGPEQNIDNV-----DEDG--NDDLNMLANMPQLAEIRALIQQNPEMLAAVLQQLAAVNPRLVQT 236

  Fly   225 LRGGMQIFVKTLTG--------------------KTITLEVEPSDTIENVKA 256
            ::...|.|:..|.|                    ..|.|..|.:..||.:||
 Worm   237 IQNNQQAFMDLLNGGAQGAGAAAGNAPERNTPRRHVIHLSPEEAAAIERIKA 288

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ubi-p63ENP_523909.2 Ubl_ubiquitin 1..76 CDD:340501 19/76 (25%)
Ubl_ubiquitin 77..152 CDD:340501 17/97 (18%)
Ubl_ubiquitin 153..228 CDD:340501 17/85 (20%)
Ubl_ubiquitin 229..304 CDD:340501 11/48 (23%)
Ubl_ubiquitin 305..380 CDD:340501
Ubl_ubiquitin 381..456 CDD:340501
Ubl_ubiquitin 457..532 CDD:340501
Ubl_ubiquitin 533..608 CDD:340501
Ubl_ubiquitin 609..684 CDD:340501
Ubl_ubiquitin 685..760 CDD:340501
rad-23NP_496488.2 rad23 3..319 CDD:273167 64/312 (21%)
Blue background indicates that the domain is not in the aligned region.

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