DRSC/TRiP Functional Genomics Resources

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Protein Alignment Awh and LHX2

DIOPT Version :10

Sequence 1:NP_001261379.1 Gene:Awh / 38451 FlyBaseID:FBgn0013751 Length:287 Species:Drosophila melanogaster
Sequence 2:NP_004780.3 Gene:LHX2 / 9355 HGNCID:6594 Length:406 Species:Homo sapiens


Alignment Length:356 Identity:105/356 - (29%)
Similarity:161/356 - (45%) Gaps:92/356 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 CAACGEPISDRFFLEVGGCSWHAHCLRCCMCMCPLDRQQSCFIRERQVYCKADYSKNFGA-KCSK 71
            ||.||..||||::|......||..||:||.|...|:.:.:||.::..:|||.||.:.|.. :|::
Human    53 CAGCGGKISDRYYLLAVDKQWHMRCLKCCECKLNLESELTCFSKDGSIYCKEDYYRRFSVQRCAR 117

  Fly    72 CCRGISASDWVRRARELVFHLACFACDQCGRQLSTGEQFALMDDRVLCKAHYLETVEG------- 129
            |..|||||:.|.|||:||:||.||.|..|.:.|:||:.|.:.|..|.|:.|:...::|       
Human   118 CHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFEALLQGEYPAHFN 182

  Fly   130 -----------------------------------GTT---------SSDEGCD----------- 139
                                               ||.         |...|.|           
Human   183 HADVAAAAAAAAAAKSAGLGAAGANPLGLPYYNGVGTVQKGRPRKRKSPGPGADLAAYNAALSCN 247

  Fly   140 -GDGYH---------KSKTKRVRTTFTEEQLQVLQANFQIDSNPDGQDLERIASVTGLSKRVTQV 194
             .|..|         ..||||:||:|...||:.:::.|.|:.|||.:||:::|..|||:|||.||
Human   248 ENDAEHLDRDQPYPSSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQV 312

  Fly   195 WFQNSRARQKKHI----HAGKNKIRE-------PEGSSFARHINLQLTYSFQNNAQNPMHLNGSK 248
            ||||:||:.::::    :.|.:|..:       |.|.:      .:|:.:..:.:..|..|....
Human   313 WFQNARAKFRRNLLRQENTGVDKSTDAALQTGTPSGPA------SELSNASLSPSSTPTTLTDLT 371

  Fly   249 AGLYPTHESSMDELSQDSSVH--CMPSEVXL 277
            :...||..|.:..:..:...|  ..||:. |
Human   372 SPTLPTVTSVLTSVPGNLEGHEPHSPSQTTL 402

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AwhNP_001261379.1 LIM1_AWH 8..61 CDD:188759 22/52 (42%)
LIM2_AWH 69..123 CDD:188765 26/53 (49%)
Homeodomain 149..205 CDD:459649 29/55 (53%)
LHX2NP_004780.3 LIM1_Lhx2 43..106 CDD:188853 22/52 (42%)
LIM2_Lhx2_Lhx9 111..169 CDD:188763 26/57 (46%)
COG5576 <247..378 CDD:227863 41/136 (30%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 250..270 6/19 (32%)
Homeodomain 267..323 CDD:459649 29/55 (53%)
Nuclear localization signal. /evidence=ECO:0000255 307..323 11/15 (73%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 328..374 7/51 (14%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 387..406 4/16 (25%)

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