DRSC/TRiP Functional Genomics Resources

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Protein Alignment Awh and lmo3

DIOPT Version :10

Sequence 1:NP_001261379.1 Gene:Awh / 38451 FlyBaseID:FBgn0013751 Length:287 Species:Drosophila melanogaster
Sequence 2:NP_001315524.1 Gene:lmo3 / 553774 ZFINID:ZDB-GENE-050522-201 Length:167 Species:Danio rerio


Alignment Length:144 Identity:48/144 - (33%)
Similarity:73/144 - (50%) Gaps:14/144 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 TELRSCAACGEPISDRFFLEVGGCSWHAHCLRCCMCMCPLDRQQS-CFIRERQVYCKADYSKNFG 66
            |:.:.||.|...|.||:.|:.....||..||:|..|.|.|....| .:.:...:.|:.||.:.||
Zfish    30 TKPKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFG 94

  Fly    67 --AKCSKCCRGISASDWVRRARELVFHLACFACDQCGRQLSTGEQFALMDDRVLCKAHYLETVEG 129
              ..|:.|.:.|.|.:.|.||:|.|:||.||||..|.::...|::|.|.::.:||:..|      
Zfish    95 VTGNCAACSKLIPAFEMVMRAKENVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTDY------ 153

  Fly   130 GTTSSDEGCDGDGY 143
                 :||...:||
Zfish   154 -----EEGLMKEGY 162

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AwhNP_001261379.1 LIM1_AWH 8..61 CDD:188759 17/53 (32%)
LIM2_AWH 69..123 CDD:188765 21/53 (40%)
Homeodomain 149..205 CDD:459649
lmo3NP_001315524.1 LIM1_LMO1_LMO3 35..89 CDD:188774 17/53 (32%)
LIM2_LMO1_LMO3 99..153 CDD:188775 21/53 (40%)
Blue background indicates that the domain is not in the aligned region.

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