DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Awh and lmo2

DIOPT Version :10

Sequence 1:NP_001261379.1 Gene:Awh / 38451 FlyBaseID:FBgn0013751 Length:287 Species:Drosophila melanogaster
Sequence 2:NP_001011238.1 Gene:lmo2 / 496679 XenbaseID:XB-GENE-479144 Length:158 Species:Xenopus tropicalis


Alignment Length:129 Identity:39/129 - (30%)
Similarity:62/129 - (48%) Gaps:13/129 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 LRSCAACGEPISDRFFLEVGGCSWHAHCLRCCMCMCPLDRQQSCFIRERQVY------CKADYSK 63
            |.:|..|.:.|.||:||:.....||..||.|.:|.|.|..     :..|..|      |:.||.:
 Frog    27 LLTCGGCQQSIGDRYFLKAIDQYWHEDCLSCDLCGCRLGE-----VGRRLYYKLGRKLCRRDYLR 86

  Fly    64 NFG--AKCSKCCRGISASDWVRRARELVFHLACFACDQCGRQLSTGEQFALMDDRVLCKAHYLE 125
            .||  ..|:.|.:.|.|.:...|.::.|:||.||.|..|.:....|:::.|::..::|:....|
 Frog    87 LFGQDGLCASCDKRIRAFEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIYE 150

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AwhNP_001261379.1 LIM1_AWH 8..61 CDD:188759 18/58 (31%)
LIM2_AWH 69..123 CDD:188765 15/53 (28%)
Homeodomain 149..205 CDD:459649
lmo2NP_001011238.1 LIM1_LMO2 30..85 CDD:188770 19/59 (32%)
LIM2_LMO2 94..149 CDD:188771 15/54 (28%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.