Protein Alignment Awh and Lmx1a

DIOPT Version :9

• Sequence 1: NP_001261379.1
• Gene: Awh / 38451
• FlyBaseID: FBgn0013751
• Length: 287
• Species: Drosophila melanogaster
• Sequence 2: NP_729801.1
• Gene: Lmx1a / 39406
• FlyBaseID: FBgn0052105
• Length: 640
• Species: Drosophila melanogaster
• Alignment Length: 307
• Identity: 101/307 - (32%)
• Similarity: 133/307 - (43%)
• Gaps: 39/307 - (12%)

  Fly     8 CAACGEPISDRFFLEVGGCSWHAHCLRCCMCMCPLDRQQSCFIRERQVYCKADYSKNFGAKCSKC 72
            |..||:.|.|||.:.||..:||..||.||.|...|  ..:|::|..::|||.||.:.||.|||.|
  Fly   275 CEGCGQKIHDRFLMNVGDANWHEQCLACCYCGMQL--HHTCYVRNSKLYCKMDYDRLFGVKCSSC 337

  Fly    73 CRGISASDWVRR-ARELVFHLACFACDQCGRQLSTGEQFALMDDRVLCKAHYLETVEGGTTSSDE 136
            |..|...:.|.| ....||||.||.|..|...|..||||.|.|.::.|..|.||.......::.:
  Fly   338 CHAILPQELVMRPIPNFVFHLPCFVCYACRLPLQKGEQFMLRDGQLFCYRHDLEKEMFLAAAAAQ 402

  Fly   137 GC--------------DGDGYHKSKTKRVRTTFTEEQLQVLQANFQIDSNPDGQDLERIASVTGL 187
            .|              ||    :...||.||..|.:|.:..:|:|.....|..:..|.:|..|||
  Fly   403 HCGFVGLDEEDLLRPRDG----RRGPKRPRTILTSQQRKQFKASFDQSPKPCRKVREALAKDTGL 463

  Fly   188 SKRVTQVWFQNSRARQKKHIHAGKNKIREPEGSSFARHI-NLQLTYSFQNNAQN----PMHLNGS 247
            |.||.||||||.||:.||.....|.......||...|.. |...|.....|.:.    ...|.|.
  Fly   464 SVRVVQVWFQNQRAKMKKIQRKAKQNGGSGGGSGSGRGTGNSSATDDKDTNDKEDKCVKQELGGD 528

  Fly   248 KAG-------------LYPTHESSMDELSQDSSVHCMPSEVXLEQSS 281
            .:|             |.|....|.|:...:|:.....|:: |:.|:
  Fly   529 SSGYLGGLDSTFASQPLNPNLPFSPDDYPANSNDSFCSSDLSLDGSN 575

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Awh	NP_001261379.1	LIM1_AWH	8..61	CDD:188759	22/52 (42%)
		LIM2_AWH	69..123	CDD:188765	23/54 (43%)
		Homeobox	152..204	CDD:278475	23/51 (45%)
Lmx1a	NP_729801.1	LIM1_Lmx1b	275..327	CDD:188757	23/53 (43%)
		LIM	333..388	CDD:295319	24/54 (44%)
		Homeobox	427..480	CDD:278475	23/52 (44%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C45444987
Domainoid	1	1.000	47	0.796	Domainoid score	I4515
eggNOG	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	P	PTHR24208
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
	4	3.940