DRSC/TRiP Functional Genomics Resources

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Protein Alignment Awh and inv

DIOPT Version :10

Sequence 1:NP_001261379.1 Gene:Awh / 38451 FlyBaseID:FBgn0013751 Length:287 Species:Drosophila melanogaster
Sequence 2:NP_523699.3 Gene:inv / 36239 FlyBaseID:FBgn0001269 Length:576 Species:Drosophila melanogaster


Alignment Length:146 Identity:35/146 - (23%)
Similarity:55/146 - (37%) Gaps:38/146 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   129 GGTTSSDEGCDGDGYHKSKTKRVRTTFTEEQLQVLQANFQIDSNPDGQDLERIASVTGLSKRVTQ 193
            ||.....|..||.|.  .:.||.||.|:..||..|:..|..:.....:..::::...||::...:
  Fly   454 GGGVEKGEAADGGGV--PEDKRPRTAFSGTQLARLKHEFNENRYLTEKRRQQLSGELGLNEAQIK 516

  Fly   194 VWFQNSRARQKKHIHAGKNKIREPEGSSFARHINLQLTYSFQNNAQNPMHLNGSKAGLY------ 252
            :||||.||:.||                             .:..:||:.|.....|||      
  Fly   517 IWFQNKRAKLKK-----------------------------SSGTKNPLALQLMAQGLYNHSTIP 552

  Fly   253 -PTHESSMDELSQDSS 267
             ...|..:.||.:.:|
  Fly   553 LTREEEELQELQEAAS 568

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AwhNP_001261379.1 LIM1_AWH 8..61 CDD:188759
LIM2_AWH 69..123 CDD:188765
Homeodomain 149..205 CDD:459649 17/55 (31%)
invNP_523699.3 Homeodomain 472..528 CDD:459649 17/55 (31%)
Engrail_1_C_sig 529..554 CDD:431338 6/24 (25%)
Blue background indicates that the domain is not in the aligned region.

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