Protein Alignment Awh and Lim3

DIOPT Version :9

• Sequence 1: NP_001261379.1
• Gene: Awh / 38451
• FlyBaseID: FBgn0013751
• Length: 287
• Species: Drosophila melanogaster
• Sequence 2: NP_001260559.1
• Gene: Lim3 / 35184
• FlyBaseID: FBgn0002023
• Length: 555
• Species: Drosophila melanogaster
• Alignment Length: 324
• Identity: 105/324 - (32%)
• Similarity: 155/324 - (47%)
• Gaps: 45/324 - (13%)

  Fly     1 MKTELRSCAACGEPISDRFFLEVGGCSWHAHCLRCCMCMCPLDRQQSCFIRERQVYCKADYSKNF 65
            ::..:..|..|.|.|.|||.|:|...:|||.||:|..|...|:  ..||.|..|::||.|:.|.:
  Fly   115 LEATIPKCGGCHELILDRFILKVLERTWHAKCLQCSECHGQLN--DKCFARNGQLFCKEDFFKRY 177

  Fly    66 GAKCSKCCRGISASDWVRRARELVFHLACFACDQCGRQLSTGEQFALMDDR-VLCKAHYLETVEG 129
            |.|||.|..||..:..||||::.|:||.||.|..|.|.|:||::|.||:|| ::||..|.|....
  Fly   178 GTKCSACDMGIPPTQVVRRAQDNVYHLQCFLCAMCSRTLNTGDEFYLMEDRKLICKRDYEEAKAK 242

  Fly   130 GTTSSDEGCDGDGYHKSKTKRVRTTFTEEQLQVLQANFQIDSNPDGQDLERIASVTGLSKRVTQV 194
            | ...|...|||    ...||.|||.|.:||:.|:..:.....|.....|:::..|||..||.||
  Fly   243 G-LYLDGSLDGD----QPNKRPRTTITAKQLETLKTAYNNSPKPARHVREQLSQDTGLDMRVVQV 302

  Fly   195 WFQNSRARQKK-HIHAGKNK----IREPEGS-------------------SFARH---------I 226
            ||||.||::|: ...||:.:    .|..:|:                   ||:.|         :
  Fly   303 WFQNRRAKEKRLKKDAGRTRWSQYFRSMKGNCSPRTDKFLDKDELKVDYDSFSHHDLSNDSYSTV 367

  Fly   227 NLQLTYSFQNNAQNPMHLNGSKA-GLYPTHESSMDELSQDSSVHCMPSEV---XLEQSSPARAH 286
            ||.|......::....:::||.: ..||....|...:.|..:....|..:    ::|:..:..|
  Fly   368 NLGLDEGASPHSIRGSYMHGSSSPSQYPPSSRSPPPVGQGHTFGSYPDNIVYTNIDQAVGSSLH 431

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Awh	NP_001261379.1	LIM1_AWH	8..61	CDD:188759	23/52 (44%)
		LIM2_AWH	69..123	CDD:188765	27/54 (50%)
		Homeobox	152..204	CDD:278475	22/51 (43%)
Lim3	NP_001260559.1	LIM1_Lhx3_Lhx4	122..173	CDD:188754	23/52 (44%)
		LIM2_Lhx3_Lhx4	181..236	CDD:188762	27/54 (50%)
		Homeobox	259..312	CDD:278475	22/52 (42%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C45444985
Domainoid	1	1.000	48	1.000	Domainoid score	I4481
eggNOG	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	P	PTHR24208
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
	4	3.940