DRSC/TRiP Functional Genomics Resources

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Protein Alignment Awh and al

DIOPT Version :10

Sequence 1:NP_001261379.1 Gene:Awh / 38451 FlyBaseID:FBgn0013751 Length:287 Species:Drosophila melanogaster
Sequence 2:NP_722629.1 Gene:al / 33208 FlyBaseID:FBgn0000061 Length:408 Species:Drosophila melanogaster


Alignment Length:173 Identity:51/173 - (29%)
Similarity:75/173 - (43%) Gaps:35/173 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   129 GGTTS----SDEGCDGDGY-HKSKTKRVRTTFTEEQLQVLQANFQIDSNPDGQDLERIASVTGLS 188
            |||.|    .:..|:.|.| .|.|.:|.|||||..||:.|:..|.....||....|.:|...||:
  Fly    61 GGTNSPVSDGNSDCEADEYAPKRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLT 125

  Fly   189 KRVTQVWFQNSRARQKK-------------HIHAGKNKIREPEGSSFA----RHINLQLTYSFQN 236
            :...||||||.||:.:|             ::..|...::...|::..    .|:..||...|  
  Fly   126 EARIQVWFQNRRAKWRKQEKVGPQSHPYNPYLPGGAATMQTVVGAALPPNPFTHLGFQLRKPF-- 188

  Fly   237 NAQNPMHLNGSKAGLYPTHESSMDELS-------QDSSVHCMP 272
            :||:..:|   .|..|| |.|:...:.       |.:..|.:|
  Fly   189 DAQHAANL---AAFRYP-HLSAAPMIPSGYFNQFQRAPPHMLP 227

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AwhNP_001261379.1 LIM1_AWH 8..61 CDD:188759
LIM2_AWH 69..123 CDD:188765
Homeodomain 149..205 CDD:459649 24/55 (44%)
alNP_722629.1 Homeodomain 86..142 CDD:459649 24/55 (44%)
OAR 374..391 CDD:461067
Blue background indicates that the domain is not in the aligned region.

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