DRSC/TRiP Functional Genomics Resources

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Protein Alignment Awh and CG11085

DIOPT Version :10

Sequence 1:NP_001261379.1 Gene:Awh / 38451 FlyBaseID:FBgn0013751 Length:287 Species:Drosophila melanogaster
Sequence 2:NP_572815.3 Gene:CG11085 / 32213 FlyBaseID:FBgn0030408 Length:295 Species:Drosophila melanogaster


Alignment Length:172 Identity:40/172 - (23%)
Similarity:59/172 - (34%) Gaps:54/172 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   129 GGTTSSDEGCDGDGY--HK-------SKTKRVRTTFTEEQLQVLQANFQIDSNPDGQDLERIASV 184
            ||:.....|....||  ||       .|.:|.||.||..||..|:..|:........|...:|..
  Fly   132 GGSGPGSGGGTSGGYAEHKLQLSKSGRKPRRRRTAFTHAQLAYLERKFRCQKYLSVADRSDVAET 196

  Fly   185 TGLSKRVTQVWFQNSRARQKKHIHAGKNKIREPEGSSFARHINLQLTYSFQNNAQNPMHLNGSKA 249
            ..||:...:.|:||.|.:.|:                                 ||.:.|...: 
  Fly   197 LNLSETQVKTWYQNRRTKWKR---------------------------------QNQLRLEQLR- 227

  Fly   250 GLYPTHESSM--DELSQD----SSVHCMPSEVXLEQSSPARA 285
                 |:::|  |.:.||    ..:.|.||.:....|:.|.|
  Fly   228 -----HQATMEKDFVVQDGGGAGGLGCCPSGLSSSFSAAAAA 264

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AwhNP_001261379.1 LIM1_AWH 8..61 CDD:188759
LIM2_AWH 69..123 CDD:188765
Homeodomain 149..205 CDD:459649 17/55 (31%)
CG11085NP_572815.3 Homeodomain 161..217 CDD:459649 17/55 (31%)
Blue background indicates that the domain is not in the aligned region.

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