Protein Alignment Awh and Lhx6

DIOPT Version :10

• Sequence 1: NP_001261379.1
• Gene: Awh / 38451
• FlyBaseID: FBgn0013751
• Length: 287
• Species: Drosophila melanogaster
• Sequence 2: NP_001101307.2
• Gene: Lhx6 / 311901
• RGDID: 1306174
• Length: 392
• Species: Rattus norvegicus
• Alignment Length: 293
• Identity: 120/293 - (40%)
• Similarity: 157/293 - (53%)
• Gaps: 65/293 - (22%)

  Fly     8 CAACGEPISDRFFLEVGGCSWHAHCLRCCMCMCPLDRQQSCFIRERQVYCKADYSKNFGAKCSKC 72
            |::||..|.||:.|:|....||..||.|.:|...|.:|.||:|:.:::|||.||...||.||::|
  Rat    99 CSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIYCKMDYFSRFGTKCARC 163

  Fly    73 CRGISASDWVRRARELVFHLACFACDQCGRQLSTGEQFALMDDRVLCKAHY---LE--------- 125
            .|.|.|||||||||...:|||||||..|.|||||||:|.|::::|||:.||   :|
  Rat   164 GRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENLKRAAENG 228

  Fly   126 ---TVEGGTTSSDEGCDGDGYHKSKTKRVRTTFTEEQLQVLQANFQIDSNPDGQDLERIASVTGL 187
               |:||...|..:.      .....||.||:||.|||||:||.|..|:|||.|.|:::|.:|||
  Rat   229 NGLTLEGAVPSEQDS------QPKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQTLQKLADMTGL 287

  Fly   188 SKRVTQVWFQNSRARQKKHIHAGKNKIREPEGSSFARHINLQLTYSFQNNAQNPMHLNGSKAGLY 252
            |:||.||||||.|||.|||                              ..|:|:..:|:.....
  Rat   288 SRRVIQVWFQNCRARHKKH------------------------------TPQHPVPPSGAPPSRL 322

  Fly   253 PTHESSMDELSQDSSVHCMPSEVXLEQSSPARA 285
            |:      .||.|  :|..|.      |||.||
  Rat   323 PS------SLSDD--IHYSPF------SSPERA 341

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Awh	NP_001261379.1	LIM1_AWH	8..61	CDD:188759	22/52 (42%)
		LIM2_AWH	69..123	CDD:188765	33/53 (62%)
		Homeodomain	149..205	CDD:459649	36/55 (65%)
Lhx6	NP_001101307.2	LIM1_Lhx6	99..152	CDD:188766	22/52 (42%)
		LIM2_Lhx6	160..214	CDD:188768	33/53 (62%)
		Homeodomain	249..305	CDD:459649	36/55 (65%)