DRSC/TRiP Functional Genomics Resources

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Protein Alignment Awh and rga1

DIOPT Version :10

Sequence 1:NP_001261379.1 Gene:Awh / 38451 FlyBaseID:FBgn0013751 Length:287 Species:Drosophila melanogaster
Sequence 2:NP_596743.1 Gene:rga1 / 2541022 PomBaseID:SPBC3F6.05 Length:1150 Species:Schizosaccharomyces pombe


Alignment Length:242 Identity:51/242 - (21%)
Similarity:83/242 - (34%) Gaps:55/242 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 CAACGEPISDRFFLEVGGCSWHAHCLRCCMC-------MCPLDRQQSCFIRERQVYCKADYSKNF 65
            ||:||:.||.::...:|.. :|..|.||..|       ..|:|...   :.::...|:.||.:..
pombe   116 CASCGQVISGQYVRALGNI-YHLECFRCHDCNSLVASKFFPIDDPT---LNKQVPLCETDYFRRL 176

  Fly    66 GAKCSKCCRGISASDWVRRARELVFHLACFACDQCGRQLSTGEQFALMDDRVLCKAHYLETVEGG 130
            ...|:.|  |::...:...|....||:..|.|..|.......:.:...:.:|.|..|| .|:...
pombe   177 DLLCASC--GMALRGYYITALNKKFHIEHFTCSLCYTVFGPNDSYYEYEGKVYCHYHY-STLFAA 238

  Fly   131 TTSSDEGCDGDGYHKSKTKRVRTTFTEEQLQVLQANFQIDSNPDGQDLERIASVTGLSKRVTQVW 195
            ...   ||||.         :...|.|.....:..|:.:..:                 .:.:.|
pombe   239 RCC---GCDGP---------ILRQFVEVYRNGVSQNWHVPCH-----------------MIYKFW 274

  Fly   196 FQNSRARQKKHIHAGKNKIREPEGSSFAR----------HINLQLTY 232
              |.:..||..|...|.|..|...|...:          ||...|:|
pombe   275 --NVKLCQKTSIETSKKKDSELSQSQLRKREKHLEQKIFHIWHALSY 319

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AwhNP_001261379.1 LIM1_AWH 8..61 CDD:188759 15/59 (25%)
LIM2_AWH 69..123 CDD:188765 11/53 (21%)
Homeodomain 149..205 CDD:459649 6/55 (11%)
rga1NP_596743.1 LIM1_Lrg1p_like 116..172 CDD:188777 15/59 (25%)
LIM2_Lrg1p_like 180..232 CDD:188778 11/53 (21%)
LIM 485..539 CDD:413332
RhoGAP_fLRG1 835..1044 CDD:239862
Blue background indicates that the domain is not in the aligned region.

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