DRSC/TRiP Functional Genomics Resources

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Protein Alignment Awh and vab-3

DIOPT Version :9

Sequence 1:NP_001261379.1 Gene:Awh / 38451 FlyBaseID:FBgn0013751 Length:287 Species:Drosophila melanogaster
Sequence 2:NP_001024570.1 Gene:vab-3 / 181251 WormBaseID:WBGene00006870 Length:455 Species:Caenorhabditis elegans


Alignment Length:127 Identity:34/127 - (26%)
Similarity:54/127 - (42%) Gaps:25/127 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   145 KSKTKRVRTTFTEEQLQVLQANFQIDSNPDGQDLERIASVTGLSKRVTQVWFQNSRARQKKHIHA 209
            |.|.:|.||:||:.|::.|:..|:....||....||:|....|.:...||||.|.||:.::    
 Worm   214 KRKLQRNRTSFTQVQIESLEKEFERTHYPDVFARERLAQKIQLPEARIQVWFSNRRAKWRR---- 274

  Fly   210 GKNKIREPEGSSFARHINLQLTYSFQN-------------NAQNPMHLNGSKAGLYPTHESS 258
             :.|:|....|.       .:..|..|             |..||:....|....:|::.|:
 Worm   275 -EEKMRNKRSSG-------TMDSSLSNGTPTPTPGSVTGSNMTNPIGSPASTPNRFPSNNSA 328

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AwhNP_001261379.1 LIM1_AWH 8..61 CDD:188759
LIM2_AWH 69..123 CDD:188765
Homeobox 152..204 CDD:278475 20/51 (39%)
vab-3NP_001024570.1 PAX 5..129 CDD:128645
COG5576 183..293 CDD:227863 27/90 (30%)
Homeobox 221..274 CDD:395001 20/52 (38%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R6207
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.940

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