Protein Alignment Awh and lim-7

DIOPT Version :10

• Sequence 1: NP_001261379.1
• Gene: Awh / 38451
• FlyBaseID: FBgn0013751
• Length: 287
• Species: Drosophila melanogaster
• Sequence 2: NP_491668.1
• Gene: lim-7 / 172236
• WormBaseID: WBGene00002989
• Length: 452
• Species: Caenorhabditis elegans
• Alignment Length: 277
• Identity: 89/277 - (32%)
• Similarity: 127/277 - (45%)
• Gaps: 70/277 - (25%)

  Fly     8 CAACGEPISDRFFLEVG-GCSWHAHCLRCCMCMCPLDRQQSCFIRERQVYCKADYSKNFGAKCSK 71
            ||.|...||||:||.|. ...:||.||:|..|..|||..|:.|::..|.||:.||.:.|..:||:
 Worm    56 CAGCRLEISDRYFLRVNPNLEFHAQCLKCVQCSRPLDENQTAFVKNGQTYCRDDYRRLFTTRCSR 120

  Fly    72 CCRGISASDWVRRA-RELVFHLACFACDQCGRQLSTGEQFALMDDRVLCKA-------------- 121
            |......:|.|.|| .:.||||.||||..|.::|.|||:|.:.::.:.|::
 Worm   121 CHGDFDKTDLVMRAGPQNVFHLNCFACVACEKRLQTGEEFQIKNNSLYCRSDCRGLDNPDTSASV 185

  Fly   122 ------------------------------HYLETVEGGTTS--SDEGCDG-----DGYH----- 144
                                          ..|.:::..|:|  .....||     .|:|
 Worm   186 PDYSKLNNNNNNDNNNSSSNFDEDEWDEERSTLTSLDNNTSSPLGSPKSDGVRTPLFGHHNSGSG 250

  Fly   145 --------KSKTK---RVRTTFTEEQLQVLQANFQIDSNPDGQDLERIASVTGLSKRVTQVWFQN 198
                    |.|.|   ||||...|.||::|:..:.|:|.||....||:..:||||.||.:|||||
 Worm   251 GSTSSCGKKKKDKQATRVRTVLNENQLKILRDCYSINSRPDATLKERLVEMTGLSARVIRVWFQN 315

  Fly   199 SRARQKK-HIHAGKNKI 214
            .|.:.|| .|...:|::
 Worm   316 KRCKDKKRQIQITENRL 332

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Awh	NP_001261379.1	LIM1_AWH	8..61	CDD:188759	24/53 (45%)
		LIM2_AWH	69..123	CDD:188765	22/98 (22%)
		Homeodomain	149..205	CDD:459649	27/58 (47%)
lim-7	NP_491668.1	LIM1_Isl	56..110	CDD:188752	24/53 (45%)
		LIM	118..172	CDD:413332	22/53 (42%)
		HOX	267..321	CDD:197696	26/53 (49%)