DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Awh and Lmo4

DIOPT Version :10

Sequence 1:NP_001261379.1 Gene:Awh / 38451 FlyBaseID:FBgn0013751 Length:287 Species:Drosophila melanogaster
Sequence 2:NP_034853.1 Gene:Lmo4 / 16911 MGIID:109360 Length:165 Species:Mus musculus


Alignment Length:118 Identity:44/118 - (37%)
Similarity:64/118 - (54%) Gaps:3/118 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 RSCAACGEPISDRFFLEVGGCSWHAHCLRCCMCMCPL-DRQQSCFIRERQVYCKADYSKNFG--A 67
            :.||.||..|:|||.|......||:.||:|..|...| |...||:.:...:.|:.||.:.||  .
Mouse    21 KRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRLFGNSG 85

  Fly    68 KCSKCCRGISASDWVRRARELVFHLACFACDQCGRQLSTGEQFALMDDRVLCK 120
            .||.|.:.|.||:.|.||:..|:||.||.|..|..:|..|::|..::..:.|:
Mouse    86 ACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCE 138

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AwhNP_001261379.1 LIM1_AWH 8..61 CDD:188759 20/53 (38%)
LIM2_AWH 69..123 CDD:188765 20/52 (38%)
Homeodomain 149..205 CDD:459649
Lmo4NP_034853.1 LIM1_LMO4 23..77 CDD:188772 20/53 (38%)
LIM2_LMO4 87..141 CDD:188773 20/52 (38%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.