DRSC/TRiP Functional Genomics Resources

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Protein Alignment Awh and Lhx9

DIOPT Version :10

Sequence 1:NP_001261379.1 Gene:Awh / 38451 FlyBaseID:FBgn0013751 Length:287 Species:Drosophila melanogaster
Sequence 2:NP_001036042.1 Gene:Lhx9 / 16876 MGIID:1316721 Length:397 Species:Mus musculus


Alignment Length:334 Identity:107/334 - (32%)
Similarity:160/334 - (47%) Gaps:75/334 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 CAACGEPISDRFFLEVGGCSWHAHCLRCCMCMCPLDRQQSCFIRERQVYCKADYSKNFGA-KCSK 71
            ||.||..||||::|......||..||:||.|...|:.:.:||.::..:|||.||.:.|.. :|::
Mouse    71 CAGCGGKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIYCKEDYYRRFSVQRCAR 135

  Fly    72 CCRGISASDWVRRARELVFHLACFACDQCGRQLSTGEQFALMDDRVLCKAHYLETVEG------- 129
            |..|||||:.|.|||:.|:||:||.|..|.:.|:||:.|.:.|..|.|:||:...::|       
Mouse   136 CHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETLLQGEYPPQLS 200

  Fly   130 -------------------GTTSS------------------DEGC----------DGDGYHKS- 146
                               ||...                  :.||          |...|..| 
Mouse   201 YTELAAKSGGLALPYFNGTGTVQKGRPRKRKSPALGVDIVNYNSGCNENEADHLDRDQQPYPPSQ 265

  Fly   147 KTKRVRTTFTEEQLQVLQANFQIDSNPDGQDLERIASVTGLSKRVTQVWFQNSRARQKKHIHAGK 211
            ||||:||:|...||:.:::.|.|:.|||.:||:::|..|||:|||.||||||:||:.::::...:
Mouse   266 KTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLLRQE 330

  Fly   212 N-KIREPEGSSFARHINLQLTYSFQNNAQNP-------MHLNGSKAGLYPTHESSMDELSQDSSV 268
            | .:.:.:|:|      |....|..:.|..|       ..|......:..|..|:||.....|  
Mouse   331 NGGVDKADGTS------LPAPPSADSGALTPPGTATTLTDLTNPTVTVVTTVTSNMDSHEPGS-- 387

  Fly   269 HCMPSEVXL 277
               ||:. |
Mouse   388 ---PSQTTL 393

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AwhNP_001261379.1 LIM1_AWH 8..61 CDD:188759 22/52 (42%)
LIM2_AWH 69..123 CDD:188765 26/53 (49%)
Homeodomain 149..205 CDD:459649 29/55 (53%)
Lhx9NP_001036042.1 LIM1_Lhx2 61..124 CDD:188853 22/52 (42%)
LIM2_Lhx2_Lhx9 129..187 CDD:188763 26/57 (46%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 248..272 7/23 (30%)
Homeodomain 268..324 CDD:459649 29/55 (53%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 330..365 7/40 (18%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 378..397 7/21 (33%)

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