DRSC/TRiP Functional Genomics Resources

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Protein Alignment Awh and Lhx9

DIOPT Version :9

Sequence 1:NP_001261379.1 Gene:Awh / 38451 FlyBaseID:FBgn0013751 Length:287 Species:Drosophila melanogaster
Sequence 2:NP_001036042.1 Gene:Lhx9 / 16876 MGIID:1316721 Length:397 Species:Mus musculus


Alignment Length:334 Identity:107/334 - (32%)
Similarity:160/334 - (47%) Gaps:75/334 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 CAACGEPISDRFFLEVGGCSWHAHCLRCCMCMCPLDRQQSCFIRERQVYCKADYSKNFGA-KCSK 71
            ||.||..||||::|......||..||:||.|...|:.:.:||.::..:|||.||.:.|.. :|::
Mouse    71 CAGCGGKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIYCKEDYYRRFSVQRCAR 135

  Fly    72 CCRGISASDWVRRARELVFHLACFACDQCGRQLSTGEQFALMDDRVLCKAHYLETVEG------- 129
            |..|||||:.|.|||:.|:||:||.|..|.:.|:||:.|.:.|..|.|:||:...::|       
Mouse   136 CHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETLLQGEYPPQLS 200

  Fly   130 -------------------GTTSS------------------DEGC----------DGDGYHKS- 146
                               ||...                  :.||          |...|..| 
Mouse   201 YTELAAKSGGLALPYFNGTGTVQKGRPRKRKSPALGVDIVNYNSGCNENEADHLDRDQQPYPPSQ 265

  Fly   147 KTKRVRTTFTEEQLQVLQANFQIDSNPDGQDLERIASVTGLSKRVTQVWFQNSRARQKKHIHAGK 211
            ||||:||:|...||:.:::.|.|:.|||.:||:::|..|||:|||.||||||:||:.::::...:
Mouse   266 KTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLLRQE 330

  Fly   212 N-KIREPEGSSFARHINLQLTYSFQNNAQNP-------MHLNGSKAGLYPTHESSMDELSQDSSV 268
            | .:.:.:|:|      |....|..:.|..|       ..|......:..|..|:||.....|  
Mouse   331 NGGVDKADGTS------LPAPPSADSGALTPPGTATTLTDLTNPTVTVVTTVTSNMDSHEPGS-- 387

  Fly   269 HCMPSEVXL 277
               ||:..|
Mouse   388 ---PSQTTL 393

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AwhNP_001261379.1 LIM1_AWH 8..61 CDD:188759 22/52 (42%)
LIM2_AWH 69..123 CDD:188765 26/53 (49%)
Homeobox 152..204 CDD:278475 27/51 (53%)
Lhx9NP_001036042.1 LIM1_Lhx2 61..124 CDD:188853 22/52 (42%)
LIM2_Lhx2_Lhx9 129..187 CDD:188763 26/57 (46%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 248..272 7/23 (30%)
Homeobox 271..323 CDD:278475 27/51 (53%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 330..365 7/40 (18%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 378..397 7/21 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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