DRSC/TRiP Functional Genomics Resources

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Protein Alignment Awh and Lhx8

DIOPT Version :9

Sequence 1:NP_001261379.1 Gene:Awh / 38451 FlyBaseID:FBgn0013751 Length:287 Species:Drosophila melanogaster
Sequence 2:NP_034843.2 Gene:Lhx8 / 16875 MGIID:1096343 Length:367 Species:Mus musculus


Alignment Length:239 Identity:107/239 - (44%)
Similarity:150/239 - (62%) Gaps:13/239 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 CAACGEPISDRFFLEVGGCSWHAHCLRCCMCMCPLDRQQSCFIRERQVYCKADYSKNFGAKCSKC 72
            |::||..|.|::.|:|....||..||.|.:|...|.|..||:|:::.::||.||.:.:|.:||:|
Mouse    96 CSSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGRHTSCYIKDKDIFCKLDYFRRYGTRCSRC 160

  Fly    73 CRGISASDWVRRARELVFHLACFACDQCGRQLSTGEQFALMDDRVLCKAHY-------LETVEGG 130
            .|.|.::||||||:..|:|||||||..|.|||||||:|||::::|||:.|:       ...||.|
Mouse   161 GRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHFDCMLDNLKREVENG 225

  Fly   131 TTSSDEGC---DGDGYHKSKTKRVRTTFTEEQLQVLQANFQIDSNPDGQDLERIASVTGLSKRVT 192
            ...|.||.   :.|..|....||.||:||.:||||:||.|..|:|||.|.|:::|..||||:||.
Mouse   226 NGISVEGALLTEQDVNHPKPAKRARTSFTADQLQVMQAQFAQDNNPDAQTLQKLAERTGLSRRVI 290

  Fly   193 QVWFQNSRARQKKHI---HAGKNKIREPEGSSFARHINLQLTYS 233
            ||||||.|||.|||:   |:....:.....|..:..:..::.||
Mouse   291 QVWFQNCRARHKKHVSPNHSSSAPVTAVPSSRLSPPMLEEMAYS 334

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AwhNP_001261379.1 LIM1_AWH 8..61 CDD:188759 20/52 (38%)
LIM2_AWH 69..123 CDD:188765 33/53 (62%)
Homeobox 152..204 CDD:278475 33/51 (65%)
Lhx8NP_034843.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 44..79
LIM1_Lhx7_Lhx8 95..150 CDD:188767 21/53 (40%)
LIM2_Lhx7_Lhx8 157..211 CDD:188769 33/53 (62%)
Homeobox 250..302 CDD:278475 33/51 (65%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 83 1.000 Domainoid score I8342
eggNOG 1 0.900 - - E33208_3BHYC
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H62661
Inparanoid 1 1.050 223 1.000 Inparanoid score I3511
Isobase 1 0.950 - 0 Normalized mean entropy S3139
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1161127at2759
OrthoFinder 1 1.000 - - FOG0001821
OrthoInspector 1 1.000 - - otm43439
orthoMCL 1 0.900 - - OOG6_108984
Panther 1 1.100 - - LDO PTHR24208
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R6207
SonicParanoid 1 1.000 - - X1183
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1514.810

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